Pseudomonas amygdali pv. tabaci str. ATCC 11528

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas amygdali pv. tabaci str. ATCC 11528 is a Gram-negative bacterium characterized by its rod shape and mobility. This strain possesses two replicons, indicating a complex genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged under the accessions NZ_CP042804.1 and NZ_CP042805.1, which provide genomic data that can be utilized for further research and characterization. As a member of the Pseudomonas genus, Pseudomonas amygdali pv. tabaci is known for its ecological versatility and potential pathogenicity, particularly in relation to its interaction with plant hosts. Its mobility suggests an ability to navigate its environment effectively, which can facilitate colonization and infection processes in plants. This trait is particularly significant in the context of agricultural health, as it may influence the spread of disease in crops. Understanding the genetic makeup and biological traits of Pseudomonas amygdali pv. tabaci str. ATCC 11528 is essential for developing effective management strategies against plant diseases it may cause. By studying its replicons and mobility, researchers can gain insights into its evolutionary adaptations, potentially informing practices to mitigate its impact on agriculture and plant health ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas amygdali
Strainpv. tabaci ATCC 11528

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas amygdali pv. tabaci str. ATCC 11528
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas amygdali pv. tabaci str. ATCC 11528 plasmid pTab1,

Gene Summary

Adenine Count

15729 bp

Thymine Count

14612 bp

Guanine Count

18793 bp

Cytosine Count

19028 bp

Genome Length

68162 bp

Protein-coding Genes

74 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv secretory system conjugative dna transfer family proteinPSYTB_RS29015Not AvailablePositive29364 - 2966511170.5
tyrosine-type recombinase/integrasePSYTB_RS29020Not AvailableNegative30088 - 3105035343.4
hypothetical proteinPSYTB_RS29025Not AvailableNegative31173 - 3228841543.8
helix-turn-helix domain-containing proteinPSYTB_RS29030Not AvailableNegative32340 - 3311329942.8
polyamine abc transporter substrate-binding proteinPSYTB_RS29035Not AvailablePositive33222 - 3432240550.6
hypothetical proteinPSYTB_RS29040Not AvailablePositive34421 - 346187464.11
helix-turn-helix domain-containing proteinPSYTB_RS29045Not AvailableNegative34630 - 3502514468.6
transcription termination/antitermination nusg family proteinPSYTB_RS29050Not AvailablePositive35242 - 3575419189.2
hypothetical proteinPSYTB_RS29055Not AvailablePositive35843 - 360858842.48
lytic transglycosylase domain-containing proteinPSYTB_RS29060Not AvailablePositive36098 - 3680224805.3

Displaying genes 31 – 40 of 5558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.