Pseudomonas amygdali pv. tabaci str. ATCC 11528

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas amygdali pv. tabaci str. ATCC 11528 is a Gram-negative bacterium characterized by its rod shape and mobility. This strain possesses two replicons, indicating a complex genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged under the accessions NZ_CP042804.1 and NZ_CP042805.1, which provide genomic data that can be utilized for further research and characterization. As a member of the Pseudomonas genus, Pseudomonas amygdali pv. tabaci is known for its ecological versatility and potential pathogenicity, particularly in relation to its interaction with plant hosts. Its mobility suggests an ability to navigate its environment effectively, which can facilitate colonization and infection processes in plants. This trait is particularly significant in the context of agricultural health, as it may influence the spread of disease in crops. Understanding the genetic makeup and biological traits of Pseudomonas amygdali pv. tabaci str. ATCC 11528 is essential for developing effective management strategies against plant diseases it may cause. By studying its replicons and mobility, researchers can gain insights into its evolutionary adaptations, potentially informing practices to mitigate its impact on agriculture and plant health ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas amygdali
Strainpv. tabaci ATCC 11528

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas amygdali pv. tabaci str. ATCC 11528
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas amygdali pv. tabaci str. ATCC 11528 plasmid pTab1,

Gene Summary

Adenine Count

15729 bp

Thymine Count

14612 bp

Guanine Count

18793 bp

Cytosine Count

19028 bp

Genome Length

68162 bp

Protein-coding Genes

74 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ycek/yidq family lipoproteinPSYTB_RS15225Not AvailablePositive3284205 - 328458213929.9
Trna-cysNot AvailableNot AvailablePositive3284669 - 3284742Not Available
tannase/feruloyl esterase family alpha/beta hydrolasePSYTB_RS15235Not AvailableNegative3284943 - 328668262504.3
efflux transporter outer membrane subunitPSYTB_RS15240Not AvailableNegative3286797 - 328820650543.0
efflux rnd transporter permease subunitPSYTB_RS15245Not AvailableNegative3288206 - 3291352111585.0
efflux rnd transporter periplasmic adaptor subunitPSYTB_RS15250Not AvailableNegative3291355 - 329255742400.3
sensor histidine kinase efflux regulator baesPSYTB_RS15255Not AvailablePositive3292702 - 329409350848.4
response regulatorPSYTB_RS15260Not AvailablePositive3294099 - 329477325097.4
llm class flavin-dependent oxidoreductasePSYTB_RS15270Not AvailableNegative3295120 - 329652052162.6
acyl-coa dehydrogenase family proteinPSYTB_RS15275Not AvailableNegative3296525 - 329696516108.1

Displaying genes 3001 – 3010 of 5558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.