Pseudomonas amygdali pv. tabaci str. ATCC 11528

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas amygdali pv. tabaci str. ATCC 11528 is a Gram-negative bacterium characterized by its rod shape and mobility. This strain possesses two replicons, indicating a complex genetic structure that may contribute to its adaptability and survival in various environments. The strain is cataloged under the accessions NZ_CP042804.1 and NZ_CP042805.1, which provide genomic data that can be utilized for further research and characterization. As a member of the Pseudomonas genus, Pseudomonas amygdali pv. tabaci is known for its ecological versatility and potential pathogenicity, particularly in relation to its interaction with plant hosts. Its mobility suggests an ability to navigate its environment effectively, which can facilitate colonization and infection processes in plants. This trait is particularly significant in the context of agricultural health, as it may influence the spread of disease in crops. Understanding the genetic makeup and biological traits of Pseudomonas amygdali pv. tabaci str. ATCC 11528 is essential for developing effective management strategies against plant diseases it may cause. By studying its replicons and mobility, researchers can gain insights into its evolutionary adaptations, potentially informing practices to mitigate its impact on agriculture and plant health ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas amygdali
Strainpv. tabaci ATCC 11528

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas amygdali pv. tabaci str. ATCC 11528
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas amygdali pv. tabaci str. ATCC 11528 plasmid pTab1,

Gene Summary

Adenine Count

15729 bp

Thymine Count

14612 bp

Guanine Count

18793 bp

Cytosine Count

19028 bp

Genome Length

68162 bp

Protein-coding Genes

74 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenasePSYTB_RS07535Not AvailablePositive1558935 - 156004739275.7
s-formylglutathione hydrolasePSYTB_RS07540Not AvailablePositive1560123 - 156096831403.0
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthasePSYTB_RS07545Not AvailablePositive1561021 - 156149416765.3
trna pseudouridine(13) synthase trudPSYTB_RS07550Not AvailablePositive1561491 - 156254938918.2
5'/3'-nucleotidase surePSYTB_RS07555Not AvailablePositive1562537 - 156328626599.6
protein-l-isoaspartate(d-aspartate) o-methyltransferasePSYTB_RS07560Not AvailablePositive1563328 - 156396323466.7
peptidoglycan dd-metalloendopeptidase family proteinPSYTB_RS07565Not AvailablePositive1564172 - 156503830358.2
rna polymerase sigma factor rposPSYTB_RS07570Not AvailablePositive1565142 - 156614938193.6
ferredoxin fdxaPSYTB_RS07575Not AvailableNegative1566666 - 156698911951.1
dna mismatch repair protein mutsPSYTB_RS07580Not AvailableNegative1567249 - 156981695067.3

Displaying genes 1511 – 1520 of 5558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.