Agrobacterium tumefaciens strain 186

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain 186 is a gram-negative, rod-shaped bacterium that plays a significant role in plant pathology, particularly through its association with viridiplantae hosts. This microbe is an aerobe and exhibits mobility due to the presence of flagella, which facilitates its movement in various habitats. The optimal growth temperature for this strain is 25°C, and it thrives within a mesophilic temperature range. Strain 186 is notable for its biotic relationship as a free-living organism and is known to infect a wide variety of plant hosts, including Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice), among others. The bacterium is infamous for causing crown gall disease, characterized by tumor formation on infected plants. The disease manifests through crown and cane gall symptoms, which can significantly impact plant health and agricultural yield. The genetic makeup of Agrobacterium tumefaciens strain 186 is complex, comprising four replicons and two membranes, which are characteristic of its intracellular processes. The presence of multiple accessions, including NZ_CP042274.1, NZ_CP042276.1, NZ_CP042277.1, and NZ_CP042275.2, indicates the strain's genetic diversity and adaptability. Ecologically, A. tumefaciens serves as a model for understanding plant-microbe interactions and the mechanisms underlying tumorigenesis in plants. Its ability to transfer genetic material to host plants has implications for biotechnology, particularly in the development of genetically modified crops. Thus, studying this strain contributes valuable insights into both plant pathology and agricultural biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain 186

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain 186
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 186 chromosome Circular, complete

Gene Summary

Adenine Count

598269 bp

Thymine Count

590993 bp

Guanine Count

871384 bp

Cytosine Count

883270 bp

Genome Length

2943916 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseCG010_RS23140Not AvailableNegative1943366 - 194428933076.5
abc transporter substrate-binding proteinCG010_RS23145Not AvailableNegative1944378 - 194591355832.0
abc transporter atp-binding proteinCG010_RS23150Not AvailableNegative1945958 - 194777866911.5
hypothetical proteinCG010_RS23155Not AvailablePositive1947764 - 194812612878.5
putative quinol monooxygenaseCG010_RS23160Not AvailablePositive1948383 - 194868511567.7
bifunctional sugar phosphate isomerase/epimerase/4-hydroxyphenylpyruvate dioxygenase family proteinCG010_RS23165Not AvailableNegative1948748 - 195064969678.4
tetr/acrr family transcriptional regulatorCG010_RS23170Not AvailablePositive1950769 - 195146426300.3
type ii 3-dehydroquinate dehydrataseCG010_RS23175Not AvailableNegative1951436 - 195187916234.4
shikimate dehydrogenaseCG010_RS23180Not AvailableNegative1951876 - 195274531150.6
amino acid abc transporter atp-binding proteinCG010_RS23185Not AvailableNegative1952818 - 195357627931.0

Displaying genes 4661 – 4670 of 5441 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total