Agrobacterium tumefaciens strain 186

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain 186 is a gram-negative, rod-shaped bacterium that plays a significant role in plant pathology, particularly through its association with viridiplantae hosts. This microbe is an aerobe and exhibits mobility due to the presence of flagella, which facilitates its movement in various habitats. The optimal growth temperature for this strain is 25°C, and it thrives within a mesophilic temperature range. Strain 186 is notable for its biotic relationship as a free-living organism and is known to infect a wide variety of plant hosts, including Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice), among others. The bacterium is infamous for causing crown gall disease, characterized by tumor formation on infected plants. The disease manifests through crown and cane gall symptoms, which can significantly impact plant health and agricultural yield. The genetic makeup of Agrobacterium tumefaciens strain 186 is complex, comprising four replicons and two membranes, which are characteristic of its intracellular processes. The presence of multiple accessions, including NZ_CP042274.1, NZ_CP042276.1, NZ_CP042277.1, and NZ_CP042275.2, indicates the strain's genetic diversity and adaptability. Ecologically, A. tumefaciens serves as a model for understanding plant-microbe interactions and the mechanisms underlying tumorigenesis in plants. Its ability to transfer genetic material to host plants has implications for biotechnology, particularly in the development of genetically modified crops. Thus, studying this strain contributes valuable insights into both plant pathology and agricultural biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain 186

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain 186
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 186 chromosome Circular, complete

Gene Summary

Adenine Count

598269 bp

Thymine Count

590993 bp

Guanine Count

871384 bp

Cytosine Count

883270 bp

Genome Length

2943916 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polysaccharide biosynthesis protein uppmCG010_RS10470Not AvailableNegative2113394 - 211501659498.9
polysaccharide biosynthesis phosphomannomutase uppoCG010_RS10475Not AvailablePositive2115277 - 211669249280.9
nucleotidyltransferase family proteinCG010_RS10480Not AvailablePositive2116731 - 211702711183.5
duf86 domain-containing proteinCG010_RS10485Not AvailablePositive2117027 - 211738013189.0
group ii truncated hemoglobinCG010_RS10490Not AvailablePositive2117485 - 211788615312.2
duf423 domain-containing proteinCG010_RS10495Not AvailablePositive2117883 - 211827813155.6
hypothetical proteinCG010_RS10500Not AvailableNegative2118288 - 211857510777.6
duf2325 domain-containing proteinCG010_RS10505Not AvailableNegative2118556 - 211898115501.5
hth-type transcriptional regulator rutrCG010_RS10510Not AvailableNegative2119134 - 211977524307.1
zn-dependent hydrolaseCG010_RS10515Not AvailablePositive2120034 - 212128144733.4

Displaying genes 2111 – 2120 of 5441 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total