Thermococcus indicus strain IOH1

Gram-negative

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus indicus strain IOH1 is a Gram-negative archaeon characterized by the presence of flagella, which suggests motility. It possesses a single replicon, indicating a streamlined genomic organization that is common in archaeal species. The strain is cataloged under the accession number NZ_CP040846.1, providing a reference point for further genomic and functional studies. As a member of the Thermococcaceae family, Thermococcus indicus is adapted to extreme environments, typically thriving in high-temperature habitats such as hydrothermal vents. The presence of flagella may facilitate movement toward optimal conditions for growth and survival, enhancing its ability to colonize such extreme niches. From a biological and ecological perspective, the traits of Thermococcus indicus strain IOH1 highlight the adaptability of extremophiles to harsh environments. The single replicon suggests a potential for efficient replication and gene expression, which can be advantageous in fluctuating thermal conditions. Understanding the motility mechanisms and genomic organization of this strain can provide insights into the evolutionary strategies employed by microorganisms in extreme ecosystems. This knowledge is crucial for appreciating the role of such extremophiles in biogeochemical cycles and their potential applications in biotechnology.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus indicus
Strainstrain IOH1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thermococcus indicus strain IOH1 chromosome, complete genome.

Gene Summary

Adenine Count

501267 bp

Thymine Count

502817 bp

Guanine Count

613638 bp

Cytosine Count

608614 bp

Genome Length

2226336 bp

Protein-coding Genes

2395 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna-guided endonuclease insq/tnpb family proteinFH039_RS01815Not AvailablePositive354624 - 35591349256.3
upf0175 family proteinFH039_RS01820Not AvailablePositive356017 - 3562779762.99
duf3368 domain-containing proteinFH039_RS01825Not AvailablePositive356274 - 35678018598.1
helix-turn-helix domain-containing proteinFH039_RS01830Not AvailablePositive356930 - 35827350889.4
helix-turn-helix domain-containing proteinFH039_RS01835Not AvailablePositive358437 - 35980452196.4
oligosaccharide flippase family proteinFH039_RS01840Not AvailablePositive359831 - 36016912154.9
lipopolysaccharide biosynthesis proteinFH039_RS01845Not AvailablePositive360267 - 36148444898.1
hypothetical proteinFH039_RS01850Not AvailableNegative361471 - 36306361321.3
sulfatase-like hydrolase/transferaseFH039_RS01855Not AvailableNegative363221 - 36452850470.9
glycosyltransferase family 4 proteinFH039_RS01860Not AvailableNegative364525 - 36569144721.8

Displaying genes 371 – 380 of 2447 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.