Thermococcus indicus strain IOH1

Gram-negative

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus indicus strain IOH1 is a Gram-negative archaeon characterized by the presence of flagella, which suggests motility. It possesses a single replicon, indicating a streamlined genomic organization that is common in archaeal species. The strain is cataloged under the accession number NZ_CP040846.1, providing a reference point for further genomic and functional studies. As a member of the Thermococcaceae family, Thermococcus indicus is adapted to extreme environments, typically thriving in high-temperature habitats such as hydrothermal vents. The presence of flagella may facilitate movement toward optimal conditions for growth and survival, enhancing its ability to colonize such extreme niches. From a biological and ecological perspective, the traits of Thermococcus indicus strain IOH1 highlight the adaptability of extremophiles to harsh environments. The single replicon suggests a potential for efficient replication and gene expression, which can be advantageous in fluctuating thermal conditions. Understanding the motility mechanisms and genomic organization of this strain can provide insights into the evolutionary strategies employed by microorganisms in extreme ecosystems. This knowledge is crucial for appreciating the role of such extremophiles in biogeochemical cycles and their potential applications in biotechnology.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus indicus
Strainstrain IOH1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thermococcus indicus strain IOH1


Gene Summary

Adenine Count

501267 bp

Thymine Count

502817 bp

Guanine Count

613638 bp

Cytosine Count

608614 bp

Genome Length

2226336 bp

Protein-coding Genes

2395 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system hica family toxinFH039_RS00055Not AvailablePositive10109 - 103579327.73
aldolaseFH039_RS00060Not AvailablePositive10367 - 1092720516.0
upf0147 family proteinFH039_RS00065Not AvailableNegative10962 - 112139259.23
cob(i)yrinic acid a,c-diamide adenosyltransferaseFH039_RS00070Not AvailableNegative11332 - 1185919407.7
endonuclease nucs domain-containing proteinFH039_RS00075Not AvailablePositive11969 - 1292537214.7
hypothetical proteinFH039_RS00080Not AvailablePositive12922 - 1320910946.8
Trna-hisNot AvailableNot AvailablePositive13494 - 13570Not Available
trna(phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-n(4))- methyltransferase taw3FH039_RS00090Not AvailablePositive13713 - 1433923746.9
duf3800 domain-containing proteinFH039_RS00095Not AvailablePositive14345 - 1494722720.6
biotin/lipoate a/b protein ligase family proteinFH039_RS00100Not AvailableNegative15104 - 1585327874.4

Displaying genes 11 – 20 of 2447 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.