Thermococcus indicus strain IOH1

Gram-negative

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus indicus strain IOH1 is a Gram-negative archaeon characterized by the presence of flagella, which suggests motility. It possesses a single replicon, indicating a streamlined genomic organization that is common in archaeal species. The strain is cataloged under the accession number NZ_CP040846.1, providing a reference point for further genomic and functional studies. As a member of the Thermococcaceae family, Thermococcus indicus is adapted to extreme environments, typically thriving in high-temperature habitats such as hydrothermal vents. The presence of flagella may facilitate movement toward optimal conditions for growth and survival, enhancing its ability to colonize such extreme niches. From a biological and ecological perspective, the traits of Thermococcus indicus strain IOH1 highlight the adaptability of extremophiles to harsh environments. The single replicon suggests a potential for efficient replication and gene expression, which can be advantageous in fluctuating thermal conditions. Understanding the motility mechanisms and genomic organization of this strain can provide insights into the evolutionary strategies employed by microorganisms in extreme ecosystems. This knowledge is crucial for appreciating the role of such extremophiles in biogeochemical cycles and their potential applications in biotechnology.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus indicus
Strainstrain IOH1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thermococcus indicus strain IOH1 chromosome, complete genome.

Gene Summary

Adenine Count

501267 bp

Thymine Count

502817 bp

Guanine Count

613638 bp

Cytosine Count

608614 bp

Genome Length

2226336 bp

Protein-coding Genes

2395 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated carf protein csx1FH039_RS06625Not AvailableNegative1203971 - 120525147885.9
type iii-a crispr-associated ramp protein csm5FH039_RS06630Not AvailableNegative1205248 - 120645645634.8
type iii-a crispr-associated ramp protein csm4FH039_RS06635Not AvailableNegative1206453 - 120729831177.6
type iii-a crispr-associated ramp protein csm3FH039_RS06640Not AvailableNegative1207298 - 120817032796.7
type iii-a crispr-associated protein csm2FH039_RS06645Not AvailableNegative1208170 - 120873021235.5
type iii-a crispr-associated protein cas10/csm1FH039_RS06650Not AvailableNegative1208727 - 121106688176.9
crispr-associated endoribonuclease cas6FH039_RS06655Not AvailableNegative1211071 - 121178427904.6
tigr01177 family methyltransferaseFH039_RS06660Not AvailableNegative1215192 - 121618437570.4
ferritin family proteinFH039_RS06665Not AvailablePositive1216342 - 121668613495.1
hypothetical proteinFH039_RS06670Not AvailablePositive1216843 - 121725914920.3

Displaying genes 1341 – 1350 of 2447 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.