Thermococcus indicus strain IOH1

Gram-negative

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus indicus strain IOH1 is a Gram-negative archaeon characterized by the presence of flagella, which suggests motility. It possesses a single replicon, indicating a streamlined genomic organization that is common in archaeal species. The strain is cataloged under the accession number NZ_CP040846.1, providing a reference point for further genomic and functional studies. As a member of the Thermococcaceae family, Thermococcus indicus is adapted to extreme environments, typically thriving in high-temperature habitats such as hydrothermal vents. The presence of flagella may facilitate movement toward optimal conditions for growth and survival, enhancing its ability to colonize such extreme niches. From a biological and ecological perspective, the traits of Thermococcus indicus strain IOH1 highlight the adaptability of extremophiles to harsh environments. The single replicon suggests a potential for efficient replication and gene expression, which can be advantageous in fluctuating thermal conditions. Understanding the motility mechanisms and genomic organization of this strain can provide insights into the evolutionary strategies employed by microorganisms in extreme ecosystems. This knowledge is crucial for appreciating the role of such extremophiles in biogeochemical cycles and their potential applications in biotechnology.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus indicus
Strainstrain IOH1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thermococcus indicus strain IOH1 chromosome, complete genome.

Gene Summary

Adenine Count

501267 bp

Thymine Count

502817 bp

Guanine Count

613638 bp

Cytosine Count

608614 bp

Genome Length

2226336 bp

Protein-coding Genes

2395 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thif family adenylyltransferaseFH039_RS00545Not AvailableNegative87508 - 8820625634.1
ubiquitin-like small modifier protein 1FH039_RS00550Not AvailableNegative88219 - 884739778.71
cdp-2,3-bis-(o-geranylgeranyl)-sn-glycerol synthaseFH039_RS00555Not AvailableNegative88531 - 8904618602.0
gbsr/marr family transcriptional regulatorFH039_RS00560Not AvailableNegative89086 - 8960719919.0
hydrophobe/amphiphile efflux-3 (hae3) family transporterFH039_RS00565Not AvailablePositive89707 - 9197483014.7
cog1361 s-layer family proteinFH039_RS00570Not AvailablePositive91971 - 9434386296.6
lea type 2 family proteinFH039_RS00575Not AvailablePositive94394 - 9529933388.3
duf3201 domain-containing proteinFH039_RS00580Not AvailablePositive95343 - 9586120256.2
rsmb/nop family class i sam-dependent rna methyltransferaseFH039_RS00585Not AvailablePositive95871 - 9702843751.5
lysylphosphatidylglycerol synthase transmembrane domain-containing proteinFH039_RS00590Not AvailablePositive97031 - 9808939774.2

Displaying genes 111 – 120 of 2447 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.