Paroceanicella profunda strain D4M1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paroceanicella

Description

Paroceanicella profunda strain D4M1 is characterized by having five replicons, which indicates a complex genomic structure that may contribute to its adaptability in various environments. The strain is documented with several accessions in the NCBI database, specifically NZ_CP040818.1, NZ_CP040819.1, NZ_CP040820.1, NZ_CP040822.1, and NZ_CP040823.1. These accessions provide a basis for further genomic studies and comparisons with related microorganisms. The presence of multiple replicons in Paroceanicella profunda strain D4M1 suggests potential advantages in terms of genetic diversity and the ability to harbor various genes that can be beneficial for survival in challenging conditions. The strain's genomic complexity may facilitate metabolic versatility, allowing it to thrive in different ecological niches. From a biological perspective, the genomic characteristics of Paroceanicella profunda strain D4M1 may be indicative of its role in marine ecosystems, particularly in deep-sea environments where it was likely isolated. The ecological implications of such strains are significant, as they may contribute to biogeochemical cycling, the degradation of organic matter, and interactions with other microbial communities. Understanding the genomic features and ecological roles of strains like D4M1 can provide insights into the functioning of microbial ecosystems and their contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParoceanicella
SpeciesParoceanicella profunda
Strainstrain D4M1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paroceanicella profunda strain D4M1 plasmid pD4M1E, complete

Gene Summary

Adenine Count

22362 bp

Thymine Count

21954 bp

Guanine Count

34631 bp

Cytosine Count

35109 bp

Genome Length

114056 bp

Protein-coding Genes

122 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
p-type conjugative transfer protein trblFDP22_RS16095Not AvailableNegative3612247 - 361359944397.0
putative entry exclusion protein trbk-altFDP22_RS16100Not AvailableNegative3613603 - 361389310100.1
p-type conjugative transfer protein trbjFDP22_RS16105Not AvailableNegative3613908 - 361469027811.0
conjugal transfer protein trbeFDP22_RS16110Not AvailableNegative3614687 - 361719791576.8
virb3 family type iv secretion system proteinFDP22_RS16115Not AvailableNegative3617204 - 36174859823.21
trbc/virb2 family proteinFDP22_RS16120Not AvailableNegative3617485 - 361781711504.3
p-type conjugative transfer atpase trbbFDP22_RS16125Not AvailableNegative3617814 - 361881235111.5
amidohydrolase family proteinFDP22_RS16130Not AvailableNegative3619338 - 362031235837.0
hypothetical proteinFDP22_RS16135Not AvailableNegative3620404 - 362151941162.3
lysr family transcriptional regulatorFDP22_RS16140Not AvailablePositive3621729 - 362268234245.7

Displaying genes 4101 – 4110 of 4594 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.