Paroceanicella profunda strain D4M1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paroceanicella

Description

Paroceanicella profunda strain D4M1 is characterized by having five replicons, which indicates a complex genomic structure that may contribute to its adaptability in various environments. The strain is documented with several accessions in the NCBI database, specifically NZ_CP040818.1, NZ_CP040819.1, NZ_CP040820.1, NZ_CP040822.1, and NZ_CP040823.1. These accessions provide a basis for further genomic studies and comparisons with related microorganisms. The presence of multiple replicons in Paroceanicella profunda strain D4M1 suggests potential advantages in terms of genetic diversity and the ability to harbor various genes that can be beneficial for survival in challenging conditions. The strain's genomic complexity may facilitate metabolic versatility, allowing it to thrive in different ecological niches. From a biological perspective, the genomic characteristics of Paroceanicella profunda strain D4M1 may be indicative of its role in marine ecosystems, particularly in deep-sea environments where it was likely isolated. The ecological implications of such strains are significant, as they may contribute to biogeochemical cycling, the degradation of organic matter, and interactions with other microbial communities. Understanding the genomic features and ecological roles of strains like D4M1 can provide insights into the functioning of microbial ecosystems and their contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParoceanicella
SpeciesParoceanicella profunda
Strainstrain D4M1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paroceanicella profunda strain D4M1 plasmid pD4M1E, complete

Gene Summary

Adenine Count

22362 bp

Thymine Count

21954 bp

Guanine Count

34631 bp

Cytosine Count

35109 bp

Genome Length

114056 bp

Protein-coding Genes

122 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
holliday junction resolvase ruvxFDP22_RS15750Not AvailablePositive3542341 - 354283517806.5
duf1289 domain-containing proteinFDP22_RS15755Not AvailablePositive3542832 - 35430748941.86
tigr02281 family clan aa aspartic proteaseFDP22_RS15760Not AvailablePositive3543569 - 354424323997.4
trna dihydrouridine(20/20a) synthase dusaFDP22_RS15765Not AvailableNegative3544249 - 354525035753.4
site-specific integraseFDP22_RS15770Not AvailablePositive3545465 - 354646938787.6
arac family transcriptional regulatorFDP22_RS15775Not AvailableNegative3546795 - 354775435332.8
sdr family nad(p)-dependent oxidoreductaseFDP22_RS15780Not AvailableNegative3547916 - 354883933084.2
hypothetical proteinFDP22_RS24570Not AvailableNegative3549184 - 35493335367.72
atu4866 domain-containing proteinFDP22_RS15785Not AvailableNegative3550144 - 355049112633.6
sdr family oxidoreductaseFDP22_RS15790Not AvailableNegative3550532 - 355125425320.5

Displaying genes 4031 – 4040 of 4594 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.