Paroceanicella profunda strain D4M1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paroceanicella

Description

Paroceanicella profunda strain D4M1 is characterized by having five replicons, which indicates a complex genomic structure that may contribute to its adaptability in various environments. The strain is documented with several accessions in the NCBI database, specifically NZ_CP040818.1, NZ_CP040819.1, NZ_CP040820.1, NZ_CP040822.1, and NZ_CP040823.1. These accessions provide a basis for further genomic studies and comparisons with related microorganisms. The presence of multiple replicons in Paroceanicella profunda strain D4M1 suggests potential advantages in terms of genetic diversity and the ability to harbor various genes that can be beneficial for survival in challenging conditions. The strain's genomic complexity may facilitate metabolic versatility, allowing it to thrive in different ecological niches. From a biological perspective, the genomic characteristics of Paroceanicella profunda strain D4M1 may be indicative of its role in marine ecosystems, particularly in deep-sea environments where it was likely isolated. The ecological implications of such strains are significant, as they may contribute to biogeochemical cycling, the degradation of organic matter, and interactions with other microbial communities. Understanding the genomic features and ecological roles of strains like D4M1 can provide insights into the functioning of microbial ecosystems and their contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParoceanicella
SpeciesParoceanicella profunda
Strainstrain D4M1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paroceanicella profunda strain D4M1 plasmid pD4M1E, complete

Gene Summary

Adenine Count

22362 bp

Thymine Count

21954 bp

Guanine Count

34631 bp

Cytosine Count

35109 bp

Genome Length

114056 bp

Protein-coding Genes

122 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
low molecular weight protein-tyrosine-phosphataseFDP22_RS12175Not AvailableNegative2734391 - 273487316750.1
nad-dependent deacylaseFDP22_RS12180Not AvailablePositive2734923 - 273561824350.9
copper chaperone pcu(a)cFDP22_RS12185Not AvailableNegative2735644 - 273611116080.4
50s ribosomal protein l28FDP22_RS12190Not AvailableNegative2736309 - 273659610378.5
methylmalonyl co-a mutase-associated gtpase meabFDP22_RS12195Not AvailableNegative2736738 - 273774535602.9
imua family proteinFDP22_RS25160Not AvailablePositive2737986 - 273879527635.1
y-family dna polymeraseFDP22_RS12200Not AvailablePositive2738812 - 274095372194.9
cold shock domain-containing proteinFDP22_RS24920Not AvailablePositive2742096 - 274453188025.9
ob-fold nucleic acid binding domain-containing proteinFDP22_RS24925Not AvailablePositive2746188 - 274665517156.8
bcct family transporterFDP22_RS12210Not AvailableNegative2747581 - 274917957240.1

Displaying genes 3351 – 3360 of 4594 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.