Paroceanicella profunda strain D4M1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paroceanicella

Description

Paroceanicella profunda strain D4M1 is characterized by having five replicons, which indicates a complex genomic structure that may contribute to its adaptability in various environments. The strain is documented with several accessions in the NCBI database, specifically NZ_CP040818.1, NZ_CP040819.1, NZ_CP040820.1, NZ_CP040822.1, and NZ_CP040823.1. These accessions provide a basis for further genomic studies and comparisons with related microorganisms. The presence of multiple replicons in Paroceanicella profunda strain D4M1 suggests potential advantages in terms of genetic diversity and the ability to harbor various genes that can be beneficial for survival in challenging conditions. The strain's genomic complexity may facilitate metabolic versatility, allowing it to thrive in different ecological niches. From a biological perspective, the genomic characteristics of Paroceanicella profunda strain D4M1 may be indicative of its role in marine ecosystems, particularly in deep-sea environments where it was likely isolated. The ecological implications of such strains are significant, as they may contribute to biogeochemical cycling, the degradation of organic matter, and interactions with other microbial communities. Understanding the genomic features and ecological roles of strains like D4M1 can provide insights into the functioning of microbial ecosystems and their contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParoceanicella
SpeciesParoceanicella profunda
Strainstrain D4M1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paroceanicella profunda strain D4M1 plasmid pD4M1E, complete

Gene Summary

Adenine Count

22362 bp

Thymine Count

21954 bp

Guanine Count

34631 bp

Cytosine Count

35109 bp

Genome Length

114056 bp

Protein-coding Genes

122 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protocatechuate 3,4-dioxygenase subunit betaFDP22_RS00920Not AvailablePositive212889 - 21361427116.2
protocatechuate 3,4-dioxygenase subunit alphaFDP22_RS00925Not AvailablePositive213616 - 21423022640.0
3-keto-5-aminohexanoate cleavage proteinFDP22_RS00930Not AvailablePositive214317 - 21515330117.0
3-carboxy-cis,cis-muconate cycloisomeraseFDP22_RS00935Not AvailablePositive215226 - 21654846235.8
abc transporter permease subunitFDP22_RS00940Not AvailableNegative216917 - 21775630511.9
abc transporter permease subunitFDP22_RS00945Not AvailableNegative217756 - 21865833108.3
abc transporter atp-binding proteinFDP22_RS00950Not AvailableNegative218747 - 21985640542.0
polyamine abc transporter substrate-binding proteinFDP22_RS00955Not AvailableNegative219853 - 22094439932.2
acetolactate synthase 3 large subunitFDP22_RS00960Not AvailablePositive221379 - 22313363415.0
acetolactate synthase small subunitFDP22_RS00965Not AvailablePositive223156 - 22374621269.8

Displaying genes 1131 – 1140 of 4594 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.