Nocardioides jishulii strain dk3136

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides jishulii strain dk3136 is characterized by having a single replicon, which is significant for its genomic stability and replication processes. The complete genome of this strain is documented under the accession number NZ_CP040748.1. This bacterium belongs to the genus Nocardioides, which is known for its ecological role in soil environments and its ability to degrade complex organic compounds. The unique traits of Nocardioides jishulii strain dk3136 may provide insights into its metabolic capabilities, particularly in bioremediation and nutrient cycling within its ecosystem. Overall, the presence of a single replicon suggests a streamlined genomic organization, which could be advantageous for the strain's adaptation to its ecological niche. Understanding these attributes may enhance our knowledge of microbial diversity and functionality in soil ecosystems.

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Propionibacteriales
Family	Nocardioidaceae
Genus	Nocardioides
Species	Nocardioides jishulii
Strain	strain dk3136

Profile

Physiology
Gram staining properties	Not Available
Shape	Not Available
Mobility	Not Available
Flagellar presence	Not Available
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Not Available
Habitat	Not Available
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Nocardioides jishulii strain dk3136 chromosome, complete genome.

NZ_CP040748.1

Gene Summary

Adenine Count

526339 bp

Thymine Count

521253 bp

Guanine Count

1240260 bp

Cytosine Count

1248290 bp

Genome Length

3536142 bp

Protein-coding Genes

3349 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
nudix domain-containing protein	FCL41_RS13985	Not Available	Positive	2948869 - 2949342	17245.2
hypothetical protein	FCL41_RS13990	Not Available	Positive	2949420 - 2949713	10199.1
duf559 domain-containing protein	FCL41_RS13995	Not Available	Negative	2949767 - 2950702	33794.3
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab	FCL41_RS14000	Not Available	Negative	2950796 - 2952310	54787.5
hypothetical protein	FCL41_RS14005	Not Available	Negative	2952371 - 2952877	18170.5
amino acid abc transporter atp-binding protein	FCL41_RS14010	Not Available	Positive	2953003 - 2953779	28219.3
glutamate abc transporter substrate-binding protein	FCL41_RS14015	Not Available	Positive	2953839 - 2954717	31676.8
amino acid abc transporter permease	FCL41_RS14020	Not Available	Positive	2954802 - 2955452	22853.5
amino acid abc transporter permease	FCL41_RS14025	Not Available	Positive	2955449 - 2956336	31824.5
tetr/acrr family transcriptional regulator	FCL41_RS14030	Not Available	Positive	2956382 - 2956981	21845.1

Displaying genes 2831 – 2840 of 3412 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.