Natrinema pallidum strain BOL6-1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natrialbaceae

Genus

Natrinema

Description

Natrinema pallidum strain BOL6-1 is characterized by possessing two replicons, which is a notable trait among archaeal species. This strain is cataloged under two accessions: NZ_CP040638.1 and NZ_CP040639.1. The presence of dual replicons may suggest a potential for increased genetic diversity and adaptability, which is often advantageous in extreme environments where halophilic archaea, such as Natrinema pallidum, are typically found. The ecological niche of Natrinema pallidum generally includes hypersaline conditions, where its physiological traits enable survival and growth. Understanding the genomic structure of Natrinema pallidum strain BOL6-1 through its replicons may provide insights into its metabolic pathways and evolutionary strategies. The study of such strains can enhance our knowledge of microbial life in extreme conditions, which can have implications for biotechnology applications, including bioremediation and the development of novel enzymes. Thus, the genomic characteristics of Natrinema pallidum strain BOL6-1, particularly its dual replicons, may be significant in exploring the adaptability and ecological roles of halophilic microorganisms.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatrialbaceae
GenusNatrinema
SpeciesNatrinema pallidum
Strainstrain BOL6-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Natrinema pallidum strain BOL6-1 plasmid pNPA200, complete

Gene Summary

Adenine Count

40108 bp

Thymine Count

40018 bp

Guanine Count

61262 bp

Cytosine Count

61813 bp

Genome Length

203201 bp

Protein-coding Genes

186 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-coa dehydrogenase family proteinFGF80_RS18160Not AvailablePositive153902 - 15502640853.5
3-hydroxyacyl-coa dehydrogenase family proteinFGF80_RS18165Not AvailableNegative155029 - 15589231066.5
acyl-coa synthetaseFGF80_RS18170Not AvailableNegative156095 - 15773260211.7
methylmalonyl-coa mutaseFGF80_RS18175Not AvailablePositive157949 - 15964963335.6
phenylacetate--coa ligase paakFGF80_RS18180Not AvailableNegative160162 - 16146948426.5
amidohydrolase family proteinFGF80_RS18185Not AvailablePositive161682 - 16255432158.4
ethd family reductaseFGF80_RS18190Not AvailableNegative163064 - 16338411617.5
helix-turn-helix domain-containing proteinFGF80_RS18195Not AvailableNegative163532 - 16417023477.7
phenylacetic acid catabolic proteinFGF80_RS18200Not AvailablePositive164255 - 16519336002.1
1,2-phenylacetyl-coa epoxidase subunit paabFGF80_RS18205Not AvailablePositive165199 - 16554313239.1

Displaying genes 141 – 150 of 298 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.