Agrobacterium tumefaciens strain CFBP6623

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP6623 is a Gram-negative, rod-shaped bacterium known for its mobility, which is facilitated by the presence of flagella. This strain is classified as an aerobe, meaning it requires oxygen for growth, and thrives optimally at a temperature of 25°C within a mesophilic temperature range. It possesses a complex genetic structure with three replicons and is characterized by having two membranes. This bacterium is free-living and can inhabit multiple environments, making it versatile in its ecological niche. It interacts with a variety of hosts, particularly within the plant kingdom (Viridiplantae), including economically significant species such as Triticum aestivum (wheat), Solanum tuberosum (potato), and Oryza sativa (rice), among others. These interactions can lead to the development of crown gall disease, a condition marked by tumor formation on plants, specifically crown gall tumors and symptoms associated with crown and cane galls. The health effects associated with A. tumefaciens strain CFBP6623 highlight its role as a plant pathogen, leading to significant agricultural implications. Understanding its biotic relationships and pathogenic effects is crucial for developing management strategies to mitigate the impact of crown gall disease on crop production. This underscores the importance of A. tumefaciens in both ecological dynamics and agricultural health, emphasizing the need for ongoing research in plant pathology and microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP6623

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP6623
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP6623 chromosome circular,

Gene Summary

Adenine Count

629263 bp

Thymine Count

618226 bp

Guanine Count

893014 bp

Cytosine Count

913143 bp

Genome Length

3053646 bp

Protein-coding Genes

2790 genes

Non-Coding Genes

182 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cobalamin biosynthesis protein cobwCFBP6623_RS13480Not AvailableNegative2701263 - 270230037242.7
duf1636 family proteinCFBP6623_RS13485Not AvailableNegative2702297 - 270272214808.5
cob(i)yrinic acid a,c-diamide adenosyltransferaseCFBP6623_RS13490Not AvailablePositive2703193 - 270381022626.3
cobyric acid synthaseCFBP6623_RS13495Not AvailablePositive2703812 - 270526951350.0
adenosylcobinamide-phosphate synthase cbibCFBP6623_RS13500Not AvailableNegative2705256 - 270622133657.4
threonine-phosphate decarboxylase cobdCFBP6623_RS13505Not AvailablePositive2706220 - 270726637224.6
l-fuconate dehydrataseCFBP6623_RS13510Not AvailableNegative2707248 - 270852547488.0
l-rhamnose mutarotaseCFBP6623_RS13515Not AvailableNegative2708562 - 270889112995.5
mannitol dehydrogenase family proteinCFBP6623_RS13520Not AvailableNegative2708903 - 271003641646.0
zinc-binding alcohol dehydrogenase family proteinCFBP6623_RS13525Not AvailableNegative2710033 - 271104335818.3

Displaying genes 2631 – 2640 of 5172 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total