Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain CFBP6623 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain CFBP6623 chromosome circular,
Gene Summary
Adenine Count
629263 bp
Thymine Count
618226 bp
Guanine Count
893014 bp
Cytosine Count
913143 bp
Genome Length
3053646 bp
Protein-coding Genes
2790 genes
Non-Coding Genes
182 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(37)-n1)-methyltransferase trmd | CFBP6623_RS12965 | Not Available | Positive | 2580345 - 2581043 | 25205.2 |
| sulfite exporter taue/safe family protein | CFBP6623_RS12970 | Not Available | Negative | 2581025 - 2581771 | 25803.3 |
| 50s ribosomal protein l19 | CFBP6623_RS12975 | Not Available | Positive | 2582039 - 2582578 | 19461.1 |
| transporter substrate-binding domain-containing protein | CFBP6623_RS12980 | Not Available | Positive | 2582704 - 2583501 | 28708.4 |
| amino acid abc transporter permease | CFBP6623_RS12985 | Not Available | Positive | 2583498 - 2584331 | 30447.2 |
| mfs transporter | CFBP6623_RS12990 | Not Available | Negative | 2584379 - 2585656 | 46376.4 |
| 3-isopropylmalate dehydratase large subunit | CFBP6623_RS13000 | Not Available | Positive | 2586059 - 2587468 | 50931.5 |
| m48 family metalloprotease | CFBP6623_RS13005 | Not Available | Negative | 2587530 - 2588990 | 52789.9 |
| atp-binding cassette domain-containing protein | CFBP6623_RS13015 | Not Available | Negative | 2589298 - 2590014 | 25450.7 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | CFBP6623_RS13020 | Not Available | Negative | 2590011 - 2591651 | 58031.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


