Agrobacterium tumefaciens strain CFBP6623

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP6623 is a Gram-negative, rod-shaped bacterium known for its mobility, which is facilitated by the presence of flagella. This strain is classified as an aerobe, meaning it requires oxygen for growth, and thrives optimally at a temperature of 25°C within a mesophilic temperature range. It possesses a complex genetic structure with three replicons and is characterized by having two membranes. This bacterium is free-living and can inhabit multiple environments, making it versatile in its ecological niche. It interacts with a variety of hosts, particularly within the plant kingdom (Viridiplantae), including economically significant species such as Triticum aestivum (wheat), Solanum tuberosum (potato), and Oryza sativa (rice), among others. These interactions can lead to the development of crown gall disease, a condition marked by tumor formation on plants, specifically crown gall tumors and symptoms associated with crown and cane galls. The health effects associated with A. tumefaciens strain CFBP6623 highlight its role as a plant pathogen, leading to significant agricultural implications. Understanding its biotic relationships and pathogenic effects is crucial for developing management strategies to mitigate the impact of crown gall disease on crop production. This underscores the importance of A. tumefaciens in both ecological dynamics and agricultural health, emphasizing the need for ongoing research in plant pathology and microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP6623

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP6623
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP6623 chromosome circular,

Gene Summary

Adenine Count

629263 bp

Thymine Count

618226 bp

Guanine Count

893014 bp

Cytosine Count

913143 bp

Genome Length

3053646 bp

Protein-coding Genes

2790 genes

Non-Coding Genes

182 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseCFBP6623_RS09495Not AvailableNegative1881057 - 188219339145.0
putative lipid ii flippase ftswCFBP6623_RS09500Not AvailableNegative1882200 - 188335442373.0
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseCFBP6623_RS09505Not AvailableNegative1883360 - 188476949011.4
phospho-n-acetylmuramoyl-pentapeptide- transferaseCFBP6623_RS09510Not AvailableNegative1884773 - 188587339131.0
udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligaseCFBP6623_RS09515Not AvailableNegative1885897 - 188733050766.1
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseCFBP6623_RS09520Not AvailableNegative1887327 - 188878750991.0
peptidoglycan d,d-transpeptidase ftsi family proteinCFBP6623_RS09525Not AvailableNegative1888847 - 189058962910.6
hypothetical proteinCFBP6623_RS09530Not AvailableNegative1890589 - 189114319643.7
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhCFBP6623_RS09535Not AvailableNegative1891145 - 189217036247.5
division/cell wall cluster transcriptional repressor mrazCFBP6623_RS09540Not AvailableNegative1892185 - 189262516129.3

Displaying genes 1911 – 1920 of 5172 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total