Agrobacterium tumefaciens strain CFBP5499

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP5499 is a Gram-negative, rod-shaped bacterium that requires oxygen for aerobic respiration. This strain is motile, possessing flagella that contribute to its movement. The optimal growth temperature for CFBP5499 is 25°C, and it falls within the mesophilic temperature range. Notably, this bacterium contains five replicons and has a characteristic double membrane structure. CFBP5499 is free-living and exhibits a biotic relationship primarily with various members of the Viridiplantae kingdom. It has been identified as a pathogen affecting several important plant hosts, including Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), Oryza sativa (rice), and others, including Arabidopsis and Cannabis. The interactions between CFBP5499 and these hosts can lead to significant health effects, particularly the development of crown gall disease, which is characterized by the formation of tumors known as crown galls. The ability of A. tumefaciens to induce tumor formation in a wide range of plant hosts highlights its ecological role as a plant pathogen. This capability not only impacts agricultural productivity by affecting crop health but also provides insight into the mechanisms of tumorigenesis in plants, potentially informing biotechnological applications in genetic engineering and plant breeding.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP5499

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP5499
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP5499 chromosome linear,

Gene Summary

Adenine Count

465823 bp

Thymine Count

469825 bp

Guanine Count

681096 bp

Cytosine Count

684581 bp

Genome Length

2301325 bp

Protein-coding Genes

1963 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
llm class flavin-dependent oxidoreductaseCFBP5499_RS18890Not AvailableNegative862591 - 86365839099.6
type i polyketide synthaseCFBP5499_RS18895Not AvailableNegative863698 - 868260160675.0
amp-binding proteinCFBP5499_RS18900Not AvailableNegative868302 - 87058483072.8
hypothetical proteinCFBP5499_RS18905Not AvailableNegative870634 - 8708317346.21
non-ribosomal peptide synthetaseCFBP5499_RS18910Not AvailablePositive870877 - 875445166834.0
class i sam-dependent dna methyltransferaseCFBP5499_RS18915Not AvailablePositive875442 - 87633832913.6
aminotransferase class iii-fold pyridoxal phosphate-dependent enzymeCFBP5499_RS18920Not AvailablePositive876335 - 87781052672.1
mbth family proteinCFBP5499_RS18925Not AvailablePositive877825 - 8780649018.53
siderophore biosynthesis proteinCFBP5499_RS18930Not AvailablePositive878076 - 87859419303.2
siderophore biosynthesis proteinCFBP5499_RS18935Not AvailablePositive878591 - 87915420964.1

Displaying genes 881 – 890 of 5416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total