Agrobacterium tumefaciens strain CFBP5499

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP5499 is a Gram-negative, rod-shaped bacterium that requires oxygen for aerobic respiration. This strain is motile, possessing flagella that contribute to its movement. The optimal growth temperature for CFBP5499 is 25°C, and it falls within the mesophilic temperature range. Notably, this bacterium contains five replicons and has a characteristic double membrane structure. CFBP5499 is free-living and exhibits a biotic relationship primarily with various members of the Viridiplantae kingdom. It has been identified as a pathogen affecting several important plant hosts, including Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), Oryza sativa (rice), and others, including Arabidopsis and Cannabis. The interactions between CFBP5499 and these hosts can lead to significant health effects, particularly the development of crown gall disease, which is characterized by the formation of tumors known as crown galls. The ability of A. tumefaciens to induce tumor formation in a wide range of plant hosts highlights its ecological role as a plant pathogen. This capability not only impacts agricultural productivity by affecting crop health but also provides insight into the mechanisms of tumorigenesis in plants, potentially informing biotechnological applications in genetic engineering and plant breeding.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP5499

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP5499
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP5499 chromosome linear,

Gene Summary

Adenine Count

465823 bp

Thymine Count

469825 bp

Guanine Count

681096 bp

Cytosine Count

684581 bp

Genome Length

2301325 bp

Protein-coding Genes

1963 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoside triphosphate hydrolaseCFBP5499_RS15330Not AvailableNegative69326 - 6999124094.6
sugar phosphate isomerase/epimerase family proteinCFBP5499_RS15335Not AvailableNegative70029 - 7088030715.4
abc transporter permeaseCFBP5499_RS15340Not AvailableNegative70882 - 7187734540.8
abc transporter permeaseCFBP5499_RS15345Not AvailableNegative71874 - 7289036139.1
sugar abc transporter atp-binding proteinCFBP5499_RS15350Not AvailableNegative72883 - 7437353478.8
substrate-binding domain-containing proteinCFBP5499_RS15355Not AvailableNegative74491 - 7546833984.3
laci family dna-binding transcriptional regulatorCFBP5499_RS15360Not AvailablePositive75709 - 7678839452.2
tetratricopeptide repeat proteinCFBP5499_RS15365Not AvailablePositive76886 - 7720911914.4
sigma-54-dependent fis family transcriptional regulatorCFBP5499_RS15370Not AvailablePositive77333 - 7921668981.0
2,3-butanediol dehydrogenaseCFBP5499_RS15375Not AvailablePositive79374 - 8044738249.0

Displaying genes 181 – 190 of 5416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total