Phreatobacter stygius strain KCTC 52518

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Phreatobacteraceae

Genus

Phreatobacter

Description

Phreatobacter stygius strain KCTC 52518 is characterized by a single replicon, indicating a streamlined genomic structure. This trait can suggest a degree of genomic stability and efficiency in replication, which is crucial for survival in various environments. The strain is cataloged under the accession number NZ_CP039690.1, facilitating its identification and study in microbial databases. The classification of Phreatobacter stygius as a member of the genus Phreatobacter indicates its adaptation to aquatic environments, particularly those that may be nutrient-rich or exhibit unique geochemical conditions. Such traits are essential for understanding its ecological role and interactions within its habitat. An ecological insight into Phreatobacter stygius strain KCTC 52518 can be derived from its genomic characteristics. The presence of a single replicon may suggest that it is well-adapted to its environment, potentially allowing for efficient resource utilization and resilience to environmental stresses. This adaptability may play a significant role in biogeochemical cycles, particularly in aquatic ecosystems where microbial processes are vital for nutrient recycling and energy flow. Understanding these traits contributes to our knowledge of microbial diversity and the ecological functions they serve in their respective habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhreatobacteraceae
GenusPhreatobacter
SpeciesPhreatobacter stygius
Strainstrain KCTC 52518

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phreatobacter stygius strain KCTC 52518 chromosome, complete

Gene Summary

Adenine Count

1218500 bp

Thymine Count

1229994 bp

Guanine Count

2436825 bp

Cytosine Count

2469352 bp

Genome Length

7354671 bp

Protein-coding Genes

6864 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aa3-type cytochrome c oxidase subunit ivE8M01_RS04270Not AvailableNegative912614 - 9127605349.55
duf1036 domain-containing proteinE8M01_RS04275Not AvailableNegative912867 - 91351423180.6
dmt family transporterE8M01_RS04280Not AvailableNegative913579 - 91448731152.5
duf2312 domain-containing proteinE8M01_RS04285Not AvailablePositive914617 - 9148629324.24
dmt family transporterE8M01_RS04290Not AvailableNegative914867 - 91576330999.9
duf882 domain-containing proteinE8M01_RS04295Not AvailableNegative915962 - 91795670695.2
l,d-transpeptidase family proteinE8M01_RS04300Not AvailableNegative918176 - 91981959512.7
sigma-54-dependent transcriptional regulatorE8M01_RS04305Not AvailableNegative919976 - 92146053691.3
glycosyltransferase family 4 proteinE8M01_RS04310Not AvailableNegative921564 - 92258337006.6
udp-2,3-diacylglucosamine diphosphataseE8M01_RS04315Not AvailableNegative922583 - 92340731572.7

Displaying genes 971 – 980 of 7002 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.