Hydrogenophaga sp. PAMC20947

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Hydrogenophaga

Description

Hydrogenophaga sp. PAMC20947 is a Gram-negative, rod-shaped bacterium characterized by its single replicon structure. This organism is a member of the Hydrogenophaga genus, which is known for its metabolic capabilities, particularly in environments where hydrogen is present. The accession number associated with this strain is NZ_CP039252.1, which provides a reference for its genomic information. The Gram-negative classification indicates that Hydrogenophaga sp. PAMC20947 possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature common among many bacteria that can influence their interactions with the environment and their susceptibility to antibiotics. The rod shape is typical for many bacteria, allowing for efficient movement and nutrient uptake in various habitats. Understanding the specific traits of Hydrogenophaga sp. PAMC20947 can offer insights into its potential ecological roles, particularly in hydrogen-utilizing environments. Such environments might include wastewater treatment systems or natural settings where organic matter decomposition occurs. The metabolic capabilities associated with the Hydrogenophaga genus suggest that this strain may play a significant role in biogeochemical cycles, especially in the transformation of hydrogen and other compounds. This insight underscores the importance of studying diverse microbial species, as they contribute to ecological balance and nutrient cycling in their habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusHydrogenophaga
SpeciesHydrogenophaga sp. PAMC20947
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenophaga sp. PAMC20947 chromosome, complete genome.

Gene Summary

Adenine Count

922995 bp

Thymine Count

925749 bp

Guanine Count

1500010 bp

Cytosine Count

1502113 bp

Genome Length

4850867 bp

Protein-coding Genes

4413 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prephenate dehydrogenaseE5678_RS01790Not AvailableNegative388719 - 38959731679.4
prephenate dehydrataseE5678_RS01795Not AvailableNegative389676 - 39077339542.2
3-phosphoserine/phosphohydroxythreonine transaminaseE5678_RS01800Not AvailableNegative390777 - 39188339820.6
dna gyrase subunit aE5678_RS01805Not AvailableNegative391883 - 39458899972.4
outer membrane protein ompaE5678_RS01810Not AvailablePositive394853 - 39550021879.8
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigE5678_RS01815Not AvailablePositive395688 - 39639225761.0
had family hydrolaseE5678_RS01820Not AvailablePositive396409 - 39707423305.0
Tmrna,resume consensus sequence (at 85): actaactgcaaacgacgaNot AvailableNot AvailablePositive397087 - 397476Not Available
putative motility proteinE5678_RS01830Not AvailablePositive397903 - 3981067035.48
16s rrna pseudouridine(516) synthaseE5678_RS01835Not AvailablePositive398285 - 39905228032.5

Displaying genes 361 – 370 of 4469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.