Hydrogenophaga sp. PAMC20947

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Hydrogenophaga

Description

Hydrogenophaga sp. PAMC20947 is a Gram-negative, rod-shaped bacterium characterized by its single replicon structure. This organism is a member of the Hydrogenophaga genus, which is known for its metabolic capabilities, particularly in environments where hydrogen is present. The accession number associated with this strain is NZ_CP039252.1, which provides a reference for its genomic information. The Gram-negative classification indicates that Hydrogenophaga sp. PAMC20947 possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature common among many bacteria that can influence their interactions with the environment and their susceptibility to antibiotics. The rod shape is typical for many bacteria, allowing for efficient movement and nutrient uptake in various habitats. Understanding the specific traits of Hydrogenophaga sp. PAMC20947 can offer insights into its potential ecological roles, particularly in hydrogen-utilizing environments. Such environments might include wastewater treatment systems or natural settings where organic matter decomposition occurs. The metabolic capabilities associated with the Hydrogenophaga genus suggest that this strain may play a significant role in biogeochemical cycles, especially in the transformation of hydrogen and other compounds. This insight underscores the importance of studying diverse microbial species, as they contribute to ecological balance and nutrient cycling in their habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusHydrogenophaga
SpeciesHydrogenophaga sp. PAMC20947
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenophaga sp. PAMC20947 chromosome, complete genome.

Gene Summary

Adenine Count

922995 bp

Thymine Count

925749 bp

Guanine Count

1500010 bp

Cytosine Count

1502113 bp

Genome Length

4850867 bp

Protein-coding Genes

4413 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dsre family proteinE5678_RS01640Not AvailableNegative358298 - 35872615783.2
lysr family transcriptional regulatorE5678_RS01645Not AvailablePositive358846 - 35961026075.3
atp-binding cassette domain-containing proteinE5678_RS01650Not AvailableNegative359712 - 36045226625.6
tripartite tricarboxylate transporter substrate binding proteinE5678_RS01655Not AvailableNegative360449 - 36148937831.5
pqq-dependent catabolism-associated beta-propeller proteinE5678_RS01660Not AvailablePositive361699 - 36269735330.5
abc transporter substrate-binding proteinE5678_RS01665Not AvailablePositive362694 - 36397445913.1
abc transporter permeaseE5678_RS01670Not AvailablePositive363956 - 36480131035.8
pyrroloquinoline quinone biosynthesis protein pqqeE5678_RS01675Not AvailableNegative364899 - 36604142558.9
pyrroloquinoline quinone biosynthesis peptide chaperone pqqdE5678_RS01680Not AvailableNegative366096 - 36636810332.4
pyrroloquinoline-quinone synthase pqqcE5678_RS01685Not AvailableNegative366495 - 36722927959.2

Displaying genes 331 – 340 of 4469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.