Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas oryzae |
| Strain | strain NCPPB4346 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
892004 bp
Thymine Count
893262 bp
Guanine Count
1582493 bp
Cytosine Count
1581815 bp
Genome Length
4949574 bp
Protein-coding Genes
4236 genes
Non-Coding Genes
300 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter outer membrane subunit | EYR26_RS11675 | Not Available | Negative | 2451067 - 2452551 | 51150.1 |
| efflux rnd transporter permease subunit | EYR26_RS11680 | P94177 | Negative | 2452548 - 2455640 | 111347.0 |
| efflux rnd transporter periplasmic adaptor subunit | EYR26_RS11685 | Q44585 | Negative | 2455633 - 2456748 | 39288.4 |
| s8 family serine peptidase | EYR26_RS11695 | Q9JXM7 | Negative | 2457238 - 2459973 | 92887.2 |
| dipeptidase | EYR26_RS11700 | Not Available | Positive | 2460809 - 2461205 | 13965.5 |
| phage late control d family protein | EYR26_RS11705 | Not Available | Positive | 2461540 - 2462058 | 19212.2 |
| type iii secretion system effector avirulence protein avrbs3 | EYR26_RS11710 | Not Available | Positive | 2462115 - 2465507 | 118368.0 |
| dipeptidase | EYR26_RS11715 | Not Available | Positive | 2465529 - 2465999 | 17673.2 |
| ulp1 family type iii secretion system effector isopeptidase xopd | EYR26_RS11720 | Not Available | Negative | 2466082 - 2468049 | 72716.2 |
| is3 family transposase | EYR26_RS11725 | Not Available | Positive | 2468091 - 2469193 | 42324.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

