Geovibrio thiophilus strain DSM 11263

anaerobic

Kingdom

Pseudomonadati

Phylum

Deferribacterota

Class

Deferribacteres

Order

Deferribacterales

Family

Geovibrionaceae

Genus

Geovibrio

Description

Geovibrio thiophilus strain DSM 11263 is an anaerobic bacterium, meaning it thrives in environments devoid of oxygen. This characteristic is significant as it allows the organism to occupy ecological niches where aerobic organisms cannot survive, such as deep-sea sediments or anoxic layers of aquatic systems. The strain has been cataloged with one replicon, indicating a singular circular DNA structure typical of many bacterial genomes. This trait can influence the organism's genetic stability and replication dynamics, potentially affecting its adaptability and evolutionary strategies. The accession number for this strain is NZ_CP035108.1, which serves as a unique identifier in genomic databases, facilitating access to its genetic information and comparative studies with other microorganisms. Understanding the genomic features associated with Geovibrio thiophilus could provide insights into its metabolic pathways and ecological roles. In summary, Geovibrio thiophilus strain DSM 11263 represents an anaerobic bacterium with a single replicon, a trait that may influence its adaptability in oxygen-limited environments. Its ecological significance lies in its potential role in biogeochemical cycles, particularly in sulfur metabolism, as many members of the Geovibrio genus are known for their involvement in sulfur reduction processes.

Taxonomy

KingdomPseudomonadati
PhylumDeferribacterota
ClassDeferribacteres
OrderDeferribacterales
FamilyGeovibrionaceae
GenusGeovibrio
SpeciesGeovibrio thiophilus
Strainstrain DSM 11263

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geovibrio thiophilus strain DSM 11263 chromosome, complete genome.

Gene Summary

Adenine Count

773779 bp

Thymine Count

780554 bp

Guanine Count

720890 bp

Cytosine Count

722329 bp

Genome Length

2997552 bp

Protein-coding Genes

2718 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma factor rpod/sigaEP073_RS01260Not AvailablePositive272558 - 27352937271.8
m24 family metallopeptidaseEP073_RS01265Not AvailablePositive273529 - 27470143061.1
radical sam proteinEP073_RS01270Not AvailableNegative274881 - 27582534920.9
hydrogenase small subunitEP073_RS01275Not AvailablePositive276249 - 27735839996.2
nickel-dependent hydrogenase large subunitEP073_RS01280Not AvailablePositive277372 - 27907263096.3
hyad/hybd family hydrogenase maturation endopeptidaseEP073_RS01285Not AvailablePositive279216 - 27969817443.1
diaminopimelate epimeraseEP073_RS01290Not AvailablePositive279814 - 28062929990.7
4-hydroxy-tetrahydrodipicolinate synthaseEP073_RS01295Not AvailablePositive280646 - 28152731666.3
4-hydroxy-tetrahydrodipicolinate reductaseEP073_RS01300Not AvailablePositive281535 - 28234128554.7
cysteine-rich cwc family proteinEP073_RS01305Not AvailableNegative282403 - 2826037518.0

Displaying genes 251 – 260 of 2771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.