Geovibrio thiophilus strain DSM 11263

anaerobic

Kingdom

Pseudomonadati

Phylum

Deferribacterota

Class

Deferribacteres

Order

Deferribacterales

Family

Geovibrionaceae

Genus

Geovibrio

Description

Geovibrio thiophilus strain DSM 11263 is an anaerobic bacterium, meaning it thrives in environments devoid of oxygen. This characteristic is significant as it allows the organism to occupy ecological niches where aerobic organisms cannot survive, such as deep-sea sediments or anoxic layers of aquatic systems. The strain has been cataloged with one replicon, indicating a singular circular DNA structure typical of many bacterial genomes. This trait can influence the organism's genetic stability and replication dynamics, potentially affecting its adaptability and evolutionary strategies. The accession number for this strain is NZ_CP035108.1, which serves as a unique identifier in genomic databases, facilitating access to its genetic information and comparative studies with other microorganisms. Understanding the genomic features associated with Geovibrio thiophilus could provide insights into its metabolic pathways and ecological roles. In summary, Geovibrio thiophilus strain DSM 11263 represents an anaerobic bacterium with a single replicon, a trait that may influence its adaptability in oxygen-limited environments. Its ecological significance lies in its potential role in biogeochemical cycles, particularly in sulfur metabolism, as many members of the Geovibrio genus are known for their involvement in sulfur reduction processes.

Taxonomy

KingdomPseudomonadati
PhylumDeferribacterota
ClassDeferribacteres
OrderDeferribacterales
FamilyGeovibrionaceae
GenusGeovibrio
SpeciesGeovibrio thiophilus
Strainstrain DSM 11263

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geovibrio thiophilus strain DSM 11263 chromosome, complete genome.

Gene Summary

Adenine Count

773779 bp

Thymine Count

780554 bp

Guanine Count

720890 bp

Cytosine Count

722329 bp

Genome Length

2997552 bp

Protein-coding Genes

2718 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylenetetrahydrofolate--trna-(uracil(54)- c(5))-methyltransferase (fadh(2)-oxidizing) trmfoEP073_RS05480Not AvailablePositive1161163 - 116247348364.2
tyrosine recombinase xercEP073_RS05485Not AvailablePositive1162640 - 116354234087.1
diguanylate cyclaseEP073_RS05490Not AvailablePositive1163709 - 116501049543.6
cytochrome c3 family proteinEP073_RS05495Not AvailableNegative1165094 - 116544412307.0
l-threonylcarbamoyladenylate synthaseEP073_RS05500Not AvailableNegative1165468 - 116607922221.1
5-(carboxyamino)imidazole ribonucleotide mutaseEP073_RS05505Not AvailableNegative1166081 - 116658717281.0
phosphoribosylamine--glycine ligaseEP073_RS05510Not AvailableNegative1166584 - 116787046053.1
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolaseEP073_RS05515Not AvailableNegative1168224 - 116977756016.3
signal peptidase iiEP073_RS05520Not AvailableNegative1169774 - 117025018148.6
isoleucine--trna ligaseEP073_RS05525Not AvailableNegative1170252 - 1173053106663.0

Displaying genes 1101 – 1110 of 2771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.