Ornithobacterium rhinotracheale strain FARPER-174b

microaerophile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Ornithobacterium

Description

Ornithobacterium rhinotracheale strain FARPER-174b is a microaerophilic bacterium primarily associated with birds, specifically within the class Aves. This strain is noted for its role in respiratory diseases affecting avian species, which can pose significant health challenges in poultry. The genetic makeup of FARPER-174b is characterized by a single replicon, indicating a streamlined genomic structure that is often seen in bacteria adapted to specific ecological niches. The strain is cataloged under the accession number NZ_CP035107.1, providing a reference for further genomic studies and comparisons within the broader context of Ornithobacterium species. The microaerophilic nature of FARPER-174b suggests it thrives in environments with reduced oxygen levels, which is typical for respiratory tracts of birds where oxygen concentration can be lower than in the atmosphere. This adaptation likely contributes to its pathogenicity, as it can exploit the respiratory systems of avian hosts to cause disease. Understanding the characteristics of Ornithobacterium rhinotracheale strain FARPER-174b can provide insights into its ecological role within avian populations and its potential impact on poultry health. The respiratory diseases it induces may have significant implications for poultry management and biosecurity, highlighting the importance of monitoring and controlling such pathogens in avian environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusOrnithobacterium
SpeciesOrnithobacterium rhinotracheale
Strainstrain FARPER-174b

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Aves
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ornithobacterium rhinotracheale strain FARPER-174b chromosome,

Gene Summary

Adenine Count

691189 bp

Thymine Count

699005 bp

Guanine Count

431068 bp

Cytosine Count

432328 bp

Genome Length

2253590 bp

Protein-coding Genes

2117 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha/beta fold hydrolaseEQP59_RS00115Not AvailableNegative17999 - 1877529630.7
pyridoxine 5'-phosphate synthaseEQP59_RS00120Not AvailableNegative18775 - 1951527374.4
pfkb family carbohydrate kinaseEQP59_RS00125Not AvailableNegative19561 - 2047534372.4
radical sam family heme chaperone hemwEQP59_RS00130Not AvailablePositive20600 - 2172442968.2
glutamate racemaseEQP59_RS00135Not AvailablePositive21734 - 2254030123.6
is982 family transposaseEQP59_RS00140Not AvailableNegative22629 - 2417556441.4
hd domain-containing proteinEQP59_RS00145Not AvailablePositive24219 - 2545748272.8
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseEQP59_RS00150Not AvailablePositive25589 - 2660236980.1
bifunctional udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase/3-hydroxyacyl-acp dehydrataseEQP59_RS00155Not AvailablePositive26623 - 2801751429.4
acyl-acp--udp-n-acetylglucosamine o-acyltransferaseEQP59_RS00160Not AvailablePositive28022 - 2881028926.0

Displaying genes 61 – 70 of 2193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Respiratory diseaseCausesPMC5704556

Displaying health effects 1 – 1 of 1 in total