Iodobacter ciconiae strain H11R3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Neisseriales

Family

Chitinibacteraceae

Genus

Iodobacter

Description

Iodobacter ciconiae strain H11R3 is characterized by a single replicon, which is indicative of its genomic organization. The complete genomic sequence of this strain is accessible under the accession number NZ_CP034433.1. This strain belongs to the genus Iodobacter, which is known for its unique ability to reduce iodate to iodide, a trait that may have implications in biogeochemical cycles and environmental iodine dynamics. The presence of only one replicon is significant as it may influence the genetic stability and replication efficiency of the organism. This feature allows for a streamlined genetic architecture, which may contribute to its adaptability in various environments. The genomic data available provides insights into the metabolic pathways and potential ecological roles of Iodobacter ciconiae strain H11R3. In terms of ecology, the ability of Iodobacter species to participate in the reduction of iodate could play a crucial role in iodine cycling within aquatic ecosystems, particularly in areas where iodine is a limiting nutrient. The implications of such metabolic capabilities extend to the understanding of nutrient dynamics and the health of ecosystems influenced by iodine availability. Thus, Iodobacter ciconiae strain H11R3 serves as a relevant organism for further studies on iodine biogeochemistry and microbial interactions in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNeisseriales
FamilyChitinibacteraceae
GenusIodobacter
SpeciesIodobacter ciconiae
Strainstrain H11R3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Iodobacter ciconiae strain H11R3 chromosome, complete genome.

Gene Summary

Adenine Count

992799 bp

Thymine Count

1021820 bp

Guanine Count

951418 bp

Cytosine Count

911340 bp

Genome Length

3877377 bp

Protein-coding Genes

3313 genes

Non-Coding Genes

150 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system baseplate subunit tsskEJO50_RS01785Not AvailableNegative414526 - 41587550687.6
type vi secretion system lipoprotein tssjEJO50_RS01790Not AvailableNegative415937 - 41650320615.1
m15 family metallopeptidaseEJO50_RS01795Not AvailablePositive416949 - 41757522481.3
type vi secretion system membrane subunit tssmEJO50_RS01800Not AvailablePositive417605 - 421396139732.0
type vi secretion system-associated protein tagfEJO50_RS01805Not AvailablePositive421442 - 42242536200.8
type vi secretion system contractile sheath small subunitEJO50_RS01810Not AvailablePositive422469 - 42297218992.7
type vi secretion system contractile sheath large subunitEJO50_RS01815Not AvailablePositive422978 - 42445954798.4
hcp family type vi secretion system effectorEJO50_RS01820Not AvailablePositive424508 - 42500518008.1
ompa family proteinEJO50_RS01825Not AvailablePositive425101 - 42556816585.0
type vi secretion system vgr family proteinEJO50_RS01830Not AvailablePositive425626 - 428454102314.0

Displaying genes 411 – 420 of 3463 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.