Herbaspirillum seropedicae strain AU13965

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae strain AU13965 is a Gram-negative, aerobic bacterium characterized by its spirilla shape and mobility, facilitated by the presence of flagella. This strain is mesophilic, thriving within a moderate temperature range, and is known to inhabit the rhizosphere. H. seropedicae strain AU13965 exists as a free-living organism, meaning it can survive independently without a host. However, it has established biotic relationships with various plant species, including Homo sapiens, Triticum aestivum (wheat), Oryza sativa (rice), Hordeum vulgare (barley), and Miscanthus. These interactions suggest that the strain may play a beneficial role in plant health or growth, potentially through mechanisms such as nitrogen fixation or enhancing nutrient uptake. The genetic composition of H. seropedicae strain AU13965 includes two replicons, indicating a complex genomic architecture that may contribute to its adaptability in varying environmental conditions. The strain is cataloged under the accessions NZ_CP034394.1 and NZ_CP034395.1, which provide sequence data for further research. In ecological terms, the presence of H. seropedicae in the rhizosphere of various crops emphasizes its potential importance in agricultural systems. Its ability to establish relationships with key food crops could make it a valuable organism for promoting sustainable practices, enhancing crop yields, or improving soil health through natural means.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
Strainstrain AU13965

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Herbaspirillum seropedicae strain AU13965
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatrhizosphere
Biotic relationshipFree living
Host(s)Homo sapiens, Triticum aestivum, Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbaspirillum seropedicae strain AU13965 chromosome, complete

Gene Summary

Adenine Count

988071 bp

Thymine Count

984583 bp

Guanine Count

1688182 bp

Cytosine Count

1689162 bp

Genome Length

5349998 bp

Protein-coding Genes

4674 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter small permeaseEJD96_RS04180Not AvailablePositive853756 - 85431621068.7
trap transporter large permeaseEJD96_RS04185Not AvailablePositive854313 - 85559345547.0
voc family proteinEJD96_RS04190Not AvailableNegative856094 - 85674422879.9
methylated-dna--[protein]-cysteine s-methyltransferaseEJD96_RS04195Not AvailablePositive856859 - 85736218043.6
site-specific tyrosine recombinase xerdEJD96_RS04200Not AvailablePositive857372 - 85829534542.8
aminoacyl-trna deacylaseEJD96_RS04205Not AvailablePositive858374 - 85887417955.8
glycerol-3-phosphate 1-o-acyltransferase plsyEJD96_RS04210Not AvailablePositive858906 - 85952321802.1
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadEJD96_RS04215Not AvailableNegative859609 - 86067337929.1
dna-binding protein ybibEJD96_RS04220Not AvailablePositive860813 - 86182336022.6
xre family transcriptional regulatorEJD96_RS04225Not AvailableNegative862063 - 86251517406.2

Displaying genes 811 – 820 of 4818 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.