Herbaspirillum seropedicae strain AU13965

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae strain AU13965 is a Gram-negative, aerobic bacterium characterized by its spirilla shape and mobility, facilitated by the presence of flagella. This strain is mesophilic, thriving within a moderate temperature range, and is known to inhabit the rhizosphere. H. seropedicae strain AU13965 exists as a free-living organism, meaning it can survive independently without a host. However, it has established biotic relationships with various plant species, including Homo sapiens, Triticum aestivum (wheat), Oryza sativa (rice), Hordeum vulgare (barley), and Miscanthus. These interactions suggest that the strain may play a beneficial role in plant health or growth, potentially through mechanisms such as nitrogen fixation or enhancing nutrient uptake. The genetic composition of H. seropedicae strain AU13965 includes two replicons, indicating a complex genomic architecture that may contribute to its adaptability in varying environmental conditions. The strain is cataloged under the accessions NZ_CP034394.1 and NZ_CP034395.1, which provide sequence data for further research. In ecological terms, the presence of H. seropedicae in the rhizosphere of various crops emphasizes its potential importance in agricultural systems. Its ability to establish relationships with key food crops could make it a valuable organism for promoting sustainable practices, enhancing crop yields, or improving soil health through natural means.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
Strainstrain AU13965

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Herbaspirillum seropedicae strain AU13965
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatrhizosphere
Biotic relationshipFree living
Host(s)Homo sapiens, Triticum aestivum, Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbaspirillum seropedicae strain AU13965 chromosome, complete

Gene Summary

Adenine Count

988071 bp

Thymine Count

984583 bp

Guanine Count

1688182 bp

Cytosine Count

1689162 bp

Genome Length

5349998 bp

Protein-coding Genes

4674 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
magnesium/cobalt transporter coraEJD96_RS02195Not AvailablePositive416269 - 41723436562.6
glycine zipper 2tm domain-containing proteinEJD96_RS02200Not AvailablePositive417368 - 41783816277.1
anhydro-n-acetylmuramic acid kinaseEJD96_RS02205Not AvailableNegative417914 - 41904139194.8
m23 family metallopeptidaseEJD96_RS02210Not AvailableNegative419145 - 42054250630.4
tyrosine--trna ligaseEJD96_RS02215Not AvailablePositive420800 - 42205045729.3
d-aminoacyl-trna deacylaseEJD96_RS02220Not AvailablePositive422063 - 42253616555.0
ybhb/ybcl family raf kinase inhibitor-like proteinEJD96_RS02225Not AvailablePositive422623 - 42327023339.4
histidine phosphatase family proteinEJD96_RS02230Not AvailablePositive423280 - 42392424054.2
helix-turn-helix domain-containing proteinEJD96_RS02235Not AvailablePositive424066 - 4243359924.94
hypothetical proteinEJD96_RS02240Not AvailablePositive424378 - 4246569962.03

Displaying genes 411 – 420 of 4818 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.