Epilithonimonas vandammei strain F5649

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Epilithonimonas

Description

Epilithonimonas vandammei strain F5649 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This strain is cataloged under the accession NZ_CP034161.1, which provides a reference for its genomic data. The Gram-negative classification indicates that Epilithonimonas vandammei possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a defining feature of this group. This structural characteristic often contributes to the organism's resilience and adaptability in various environments. The single replicon suggests a streamlined genomic organization, which may influence the bacterium's replication and functional capabilities. This trait can be relevant for understanding its metabolism, growth, and response to environmental stresses. From an ecological perspective, the genus Epilithonimonas is typically associated with biofilms in aquatic environments, where they may play a role in nutrient cycling and the degradation of organic matter. The presence of Epilithonimonas vandammei strain F5649 in such habitats may contribute to the ecological balance and health of these ecosystems, highlighting the importance of studying microbial diversity and its functional implications in natural settings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusEpilithonimonas
SpeciesEpilithonimonas vandammei
Strainstrain F5649

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature30
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Epilithonimonas vandammei strain F5649 chromosome, complete

Gene Summary

Adenine Count

1044644 bp

Thymine Count

1051576 bp

Guanine Count

587673 bp

Cytosine Count

592498 bp

Genome Length

3276391 bp

Protein-coding Genes

3008 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mfs transporterEIB74_RS00645Not AvailableNegative132645 - 13388045319.2
dmt family transporterEIB74_RS00650Not AvailablePositive133944 - 13427912192.1
gh3 auxin-responsive promoter family proteinEIB74_RS00655Not AvailableNegative134299 - 13579857345.0
50s ribosomal protein l21EIB74_RS00660Not AvailablePositive136299 - 13669414181.3
50s ribosomal protein l27EIB74_RS00665Not AvailablePositive136723 - 1369809190.08
yebc/pmpr family dna-binding transcriptional regulatorEIB74_RS00670Not AvailableNegative137049 - 13778927757.6
ompa family proteinEIB74_RS00675Not AvailableNegative137889 - 13937053176.1
ssra-binding protein smpbEIB74_RS00680Not AvailableNegative139438 - 13990218180.6
abc-f family atp-binding cassette domain-containing proteinEIB74_RS00685Not AvailablePositive139974 - 14159661406.0
rod shape-determining protein rodaEIB74_RS00690Not AvailableNegative142159 - 14338845497.9

Displaying genes 131 – 140 of 3064 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
MeningitisCausesPMC11205806
CellulitisCausesPMC11205806
SepsisCausesPMC11205806

Displaying health effects 1 – 3 of 3 in total