Pigmentiphaga sp. H8

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Pigmentiphaga

Description

Pigmentiphaga sp. H8 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a streamlined genomic structure that is typical for certain bacterial species. The genome of Pigmentiphaga sp. H8 is accessible under the accession number NZ_CP033966.1, which provides a resource for further genomic and functional analyses. The Gram-negative classification of Pigmentiphaga sp. H8 suggests that it possesses an outer membrane containing lipopolysaccharides, which may play a role in its interactions with the environment, including resistance to certain antibiotics and environmental stressors. The rod shape is indicative of a common bacterial morphology that can be associated with various ecological niches. Understanding the traits of Pigmentiphaga sp. H8, particularly its Gram-negative nature and genomic characteristics, can provide insights into its ecological role. Gram-negative bacteria are often involved in nutrient cycling and can contribute to the breakdown of complex organic materials in various environments. Therefore, Pigmentiphaga sp. H8 may play a significant role in its ecosystem, potentially influencing soil health or water quality through its metabolic activities. Further studies could elucidate its specific ecological functions and interactions within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusPigmentiphaga
SpeciesPigmentiphaga sp. H8
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pigmentiphaga sp. H8 chromosome, complete genome.

Gene Summary

Adenine Count

960946 bp

Thymine Count

969016 bp

Guanine Count

2034415 bp

Cytosine Count

2028846 bp

Genome Length

5993223 bp

Protein-coding Genes

5606 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bug family tripartite tricarboxylate transporter substrate binding proteinEGT29_RS01945Not AvailableNegative401338 - 40234835308.7
gntr family transcriptional regulatorEGT29_RS01950Not AvailablePositive402459 - 40324429171.4
3-isopropylmalate dehydratase large subunitEGT29_RS01955Not AvailablePositive403369 - 40464645247.3
3-isopropylmalate dehydrataseEGT29_RS01960Not AvailablePositive404643 - 40517018568.2
cysteine hydrolase family proteinEGT29_RS01965Not AvailablePositive405170 - 40579021359.6
oxaloacetate decarboxylaseEGT29_RS01970Not AvailablePositive405804 - 40666730741.9
lysr substrate-binding domain-containing proteinEGT29_RS01975Not AvailablePositive406719 - 40762732358.3
bug family tripartite tricarboxylate transporter substrate binding proteinEGT29_RS01980Not AvailableNegative407660 - 40863733791.1
class iii extradiol dioxygenase family proteinEGT29_RS01985Not AvailableNegative408634 - 40948831453.7
protocatechuate 3,4-dioxygenaseEGT29_RS01990Not AvailableNegative409488 - 40985313691.2

Displaying genes 391 – 400 of 5668 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.