Sphingobium yanoikuyae strain SJTF8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium yanoikuyae strain SJTF8 is characterized by the presence of flagella, which may contribute to its motility in various environments. This strain possesses two replicons, suggesting a complex genomic architecture that may aid in its adaptability and metabolic capabilities. The genomic data for S. yanoikuyae strain SJTF8 is cataloged under the accessions NZ_CP033228.1 and NZ_CP033229.1. The presence of flagella indicates that S. yanoikuyae strain SJTF8 can navigate its environment, which is essential for its survival and ecological interactions. The motility provided by flagella may enhance its ability to locate nutrients or evade unfavorable conditions. Additionally, having two replicons could facilitate a more versatile response to environmental stresses, as multiple replicons can allow for greater genetic diversity and adaptability. In ecological contexts, Sphingobium yanoikuyae strains, including SJTF8, are known for their roles in the biodegradation of various environmental pollutants. The motility and genomic structure of SJTF8 could play significant roles in its efficiency as a degrader, contributing to bioremediation efforts in contaminated environments. Understanding the specific traits of this strain can provide insights into its potential applications in environmental microbiology and pollution management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae
Strainstrain SJTF8

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium yanoikuyae strain SJTF8 plasmid pF2, complete

Gene Summary

Adenine Count

35708 bp

Thymine Count

35961 bp

Guanine Count

60664 bp

Cytosine Count

59578 bp

Genome Length

191911 bp

Protein-coding Genes

191 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic ring-hydroxylating dioxygenase subunit alphaEBF16_RS03365Not AvailableNegative140669 - 14203651852.1
aromatic-ring-hydroxylating dioxygenase subunit betaEBF16_RS03370Not AvailableNegative142062 - 14258919860.9
aromatic ring-hydroxylating oxygenase subunit alphaEBF16_RS03375Not AvailableNegative142582 - 14393450105.1
sigma-54-dependent fis family transcriptional regulatorEBF16_RS03380Not AvailablePositive144147 - 14578759556.6
nad(p)/fad-dependent oxidoreductaseEBF16_RS03385Not AvailablePositive145901 - 14712744160.6
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseEBF16_RS03390Not AvailableNegative147147 - 14793527442.5
dihydrodipicolinate synthase family proteinEBF16_RS03395Not AvailablePositive148087 - 14907335207.4
aromatic ring-hydroxylating oxygenase subunit alphaEBF16_RS03400Not AvailablePositive149116 - 15029144261.3
aromatic-ring-hydroxylating dioxygenase subunit betaEBF16_RS03405Not AvailablePositive150288 - 15078518881.2
amidohydrolase family proteinEBF16_RS03410Not AvailablePositive150845 - 15185537734.7

Displaying genes 141 – 150 of 258 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.