Parasedimentitalea marina strain W43

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Parasedimentitalea

Description

Parasedimentitalea marina strain W43 is characterized by having four replicons, which are distinct pieces of DNA within its genome. This trait can suggest a complex genomic architecture that may provide the strain with various adaptations to its environment. The genomic organization is reflected in its accession numbers: NZ_CP033220.1, NZ_CP033221.1, NZ_CP033222.1, and NZ_CP033223.1, which correspond to the different replicons identified in its genome sequencing. The presence of multiple replicons may have implications for the strain's metabolic versatility and regulatory mechanisms, potentially allowing it to thrive in diverse ecological niches. Strain W43 is likely to exhibit unique physiological traits that enable its survival in marine environments, possibly including the ability to metabolize various substrates or withstand fluctuating salinity levels. Understanding the genomic structure of Parasedimentitalea marina strain W43 could provide insights into its ecological role in marine sediments, where it may contribute to biogeochemical cycles, such as carbon and nitrogen cycling. The adaptability suggested by its multi-replicon genome may facilitate interactions with other microbial communities, highlighting its potential significance in maintaining the health and balance of marine ecosystems. Further research into this strain could unveil its specific functions and interactions within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParasedimentitalea
SpeciesParasedimentitalea marina
Strainstrain W43

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parasedimentitalea marina strain W43 plasmid pW43B, complete

Gene Summary

Adenine Count

55021 bp

Thymine Count

54548 bp

Guanine Count

63482 bp

Cytosine Count

63975 bp

Genome Length

237026 bp

Protein-coding Genes

228 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEBB79_RS23875Not AvailablePositive3953 - 436314648.5
type vi secretion system contractile sheath domain-containing proteinEBB79_RS23880Not AvailablePositive4360 - 589854841.4
aminomethyl-transferring glycine dehydrogenaseEBB79_RS25195Not AvailablePositive6000 - 648819122.7
aminomethyl-transferring glycine dehydrogenaseEBB79_RS25530Not AvailablePositive6518 - 67127240.29
type vi secretion system vgr family proteinEBB79_RS25200Not AvailablePositive6747 - 805748377.3
duf6931 family proteinEBB79_RS23890Not AvailablePositive8067 - 866921417.2
paar domain-containing proteinEBB79_RS25205Not AvailablePositive8796 - 89876252.97
type vi secretion system-associated fha domain protein taghEBB79_RS23900Not AvailablePositive8996 - 1054354576.0
type vi secretion system baseplate subunit tsskEBB79_RS23905Not AvailablePositive10586 - 1192649048.5
type vi secretion system protein tssl, long formEBB79_RS23910Not AvailablePositive11941 - 1335950826.9

Displaying genes 421 – 430 of 653 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.