Xanthomonas oryzae pv. oryzae strain CFBP7319

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzae strain CFBP7319 is a gram-negative, rod-shaped bacterium that is an important pathogen of rice, specifically targeting the crop Oryza sativa. This strain is known for causing bacterial blight of rice, a significant disease that can lead to substantial yield losses in rice production. The bacterium is an aerobe, requiring oxygen for its metabolic processes, and is characterized by its mobility, facilitated by the presence of flagella. X. oryzae pv. oryzae is mesophilic, thriving within a moderate temperature range, which is conducive to its growth and pathogenicity in rice fields. Structurally, the bacterium possesses a single replicon and is surrounded by two membranes, typical of gram-negative bacteria. It is classified as free-living, indicating its capability to exist independently outside of a host organism, although it primarily associates with rice plants. The ecological implications of Xanthomonas oryzae pv. oryzae strain CFBP7319 are significant, as it plays a role in the dynamics of rice agroecosystems. Its pathogenic relationship with Oryza sativa underscores the importance of managing bacterial blight to ensure sustainable rice production. Understanding the traits and behaviors of this strain can aid in developing effective strategies for disease control and maintaining crop health. The accession number for this strain is NZ_CP033181.1, which may be useful for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
Strainpv. oryzae strain CFBP7319

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae strain CFBP7319
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzae strain CFBP7319 chromosome, complete

Gene Summary

Adenine Count

859506 bp

Thymine Count

857296 bp

Guanine Count

1516697 bp

Cytosine Count

1517273 bp

Genome Length

4750772 bp

Protein-coding Genes

4098 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is5 family transposaseEBA04_RS01950Not AvailablePositive390017 - 39099737023.6
type iii secretion system effector xopwEBA04_RS23430Not AvailablePositive391173 - 39178422581.0
hypothetical proteinEBA04_RS01960Not AvailablePositive391741 - 3919687516.17
dihydrolipoamide acetyltransferase family proteinEBA04_RS01965Not AvailableNegative392022 - 39354552197.4
dipeptidaseEBA04_RS01970Not AvailableNegative393542 - 39392514082.2
alpha-ketoacid dehydrogenase subunit betaEBA04_RS01975Not AvailableNegative393927 - 39499738549.3
pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alphaEBA04_RS01980Not AvailableNegative394990 - 39607839608.8
dipeptidaseEBA04_RS01985Not AvailableNegative396256 - 399824126187.0
tryptophan 2,3-dioxygenaseEBA04_RS01990Not AvailablePositive400230 - 40112334477.1
peptide mfs transporterEBA04_RS01995Not AvailablePositive401566 - 40307454038.6

Displaying genes 461 – 470 of 4378 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial blight of riceCausesPMC8042644
Bacterial blight (bb) of riceCausesPMC10265122
Bacterial blight of riceCausesPMC2432079
KresekCausesPMC2432079
Bacterial blightCausesPMC6304360

Displaying health effects 1 – 5 of 5 in total