Xanthomonas oryzae pv. oryzae strain CFBP7319

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzae strain CFBP7319 is a gram-negative, rod-shaped bacterium that is an important pathogen of rice, specifically targeting the crop Oryza sativa. This strain is known for causing bacterial blight of rice, a significant disease that can lead to substantial yield losses in rice production. The bacterium is an aerobe, requiring oxygen for its metabolic processes, and is characterized by its mobility, facilitated by the presence of flagella. X. oryzae pv. oryzae is mesophilic, thriving within a moderate temperature range, which is conducive to its growth and pathogenicity in rice fields. Structurally, the bacterium possesses a single replicon and is surrounded by two membranes, typical of gram-negative bacteria. It is classified as free-living, indicating its capability to exist independently outside of a host organism, although it primarily associates with rice plants. The ecological implications of Xanthomonas oryzae pv. oryzae strain CFBP7319 are significant, as it plays a role in the dynamics of rice agroecosystems. Its pathogenic relationship with Oryza sativa underscores the importance of managing bacterial blight to ensure sustainable rice production. Understanding the traits and behaviors of this strain can aid in developing effective strategies for disease control and maintaining crop health. The accession number for this strain is NZ_CP033181.1, which may be useful for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
Strainpv. oryzae strain CFBP7319

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae strain CFBP7319
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzae strain CFBP7319 chromosome, complete

Gene Summary

Adenine Count

859506 bp

Thymine Count

857296 bp

Guanine Count

1516697 bp

Cytosine Count

1517273 bp

Genome Length

4750772 bp

Protein-coding Genes

4098 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein-l-isoaspartate o-methyltransferase family proteinEBA04_RS18220Not AvailablePositive3806307 - 380696324177.2
tolc family outer membrane proteinEBA04_RS18225Not AvailablePositive3806984 - 380836349640.3
lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferaseEBA04_RS18230Not AvailableNegative3808638 - 380995448499.7
lpxl/lpxp family kdo(2)-lipid iv(a) lauroyl/palmitoleoyl acyltransferaseEBA04_RS18235Not AvailablePositive3810031 - 381095134965.5
o-antigen ligase family proteinEBA04_RS18240Not AvailableNegative3811184 - 381251847035.7
glycosyltransferaseEBA04_RS18245Not AvailableNegative3812499 - 381361139974.6
zinc-finger domain-containing proteinEBA04_RS18250Not AvailableNegative3813622 - 38138197102.39
is5-like element isxo1 family transposaseEBA04_RS18255Not AvailableNegative3814350 - 381531836211.7
is30 family transposaseEBA04_RS18265Not AvailablePositive3815500 - 381651638547.4
dipeptidaseEBA04_RS18270Not AvailableNegative3816525 - 38167648821.98

Displaying genes 3501 – 3510 of 4378 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial blight of riceCausesPMC8042644
Bacterial blight (bb) of riceCausesPMC10265122
Bacterial blight of riceCausesPMC2432079
KresekCausesPMC2432079
Bacterial blightCausesPMC6304360

Displaying health effects 1 – 5 of 5 in total