Xanthomonas oryzae pv. oryzae strain CFBP7319

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzae strain CFBP7319 is a gram-negative, rod-shaped bacterium that is an important pathogen of rice, specifically targeting the crop Oryza sativa. This strain is known for causing bacterial blight of rice, a significant disease that can lead to substantial yield losses in rice production. The bacterium is an aerobe, requiring oxygen for its metabolic processes, and is characterized by its mobility, facilitated by the presence of flagella. X. oryzae pv. oryzae is mesophilic, thriving within a moderate temperature range, which is conducive to its growth and pathogenicity in rice fields. Structurally, the bacterium possesses a single replicon and is surrounded by two membranes, typical of gram-negative bacteria. It is classified as free-living, indicating its capability to exist independently outside of a host organism, although it primarily associates with rice plants. The ecological implications of Xanthomonas oryzae pv. oryzae strain CFBP7319 are significant, as it plays a role in the dynamics of rice agroecosystems. Its pathogenic relationship with Oryza sativa underscores the importance of managing bacterial blight to ensure sustainable rice production. Understanding the traits and behaviors of this strain can aid in developing effective strategies for disease control and maintaining crop health. The accession number for this strain is NZ_CP033181.1, which may be useful for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
Strainpv. oryzae strain CFBP7319

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae strain CFBP7319
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzae strain CFBP7319 chromosome, complete

Gene Summary

Adenine Count

859506 bp

Thymine Count

857296 bp

Guanine Count

1516697 bp

Cytosine Count

1517273 bp

Genome Length

4750772 bp

Protein-coding Genes

4098 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulatorEBA04_RS07575Not AvailableNegative1517271 - 151796024893.1
efflux transporter outer membrane subunitEBA04_RS07580Not AvailablePositive1518066 - 151953552790.3
mipa/ompv family proteinEBA04_RS07585Not AvailablePositive1519555 - 152039129909.1
efflux rnd transporter periplasmic adaptor subunitEBA04_RS07590Not AvailablePositive1520417 - 152152038267.1
efflux rnd transporter permease subunitEBA04_RS07595Not AvailablePositive1521517 - 1524573109110.0
plasmid pria4b orf-3 family proteinEBA04_RS07600Not AvailablePositive1524639 - 152523521669.9
abc transporter atp-binding proteinEBA04_RS07605Not AvailablePositive1525403 - 152723567561.5
duf885 domain-containing proteinEBA04_RS07610Not AvailableNegative1527557 - 152936266920.9
Ncrna_class:otherNot AvailableNot AvailablePositive1529496 - 1529571Not Available
gfa family proteinEBA04_RS07620Not AvailablePositive1529595 - 152995112824.2

Displaying genes 1541 – 1550 of 4378 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial blight of riceCausesPMC8042644
Bacterial blight (bb) of riceCausesPMC10265122
Bacterial blight of riceCausesPMC2432079
KresekCausesPMC2432079
Bacterial blightCausesPMC6304360

Displaying health effects 1 – 5 of 5 in total