Sphingomonas paeninsulae strain YZ-8

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas paeninsulae strain YZ-8 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This strain possesses two replicons, indicating a unique genomic structure that may contribute to its adaptability and survival in various environments. The genomic information can be accessed through the following accession numbers: NZ_CP032827.1 and NZ_CP032828.1. The rod shape of Sphingomonas paeninsulae strain YZ-8 is commonly associated with efficient nutrient absorption and adaptation to diverse ecological niches. The presence of flagella not only enhances its mobility but may also play a role in its ability to colonize different surfaces and environments. The dual replicon system is noteworthy, as it can provide genetic advantages, including the potential for horizontal gene transfer and metabolic versatility. In summary, Sphingomonas paeninsulae strain YZ-8 exemplifies a well-adapted microorganism with specific morphological and genomic traits that may enable it to thrive in various ecological settings. The combination of its rod shape, flagella, and dual replicons suggests an organism capable of dynamic interactions within its environment, potentially influencing microbial community structures and nutrient cycling in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas paeninsulae
Strainstrain YZ-8

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas paeninsulae strain YZ-8
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas paeninsulae strain YZ-8 plasmid unnamed2, complete

Gene Summary

Adenine Count

44683 bp

Thymine Count

44513 bp

Guanine Count

66304 bp

Cytosine Count

66115 bp

Genome Length

221615 bp

Protein-coding Genes

238 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleotidyltransferase and hepn domain-containing proteinD3Y57_RS01735Not AvailableNegative119191 - 12011135430.9
hypothetical proteinD3Y57_RS20610Not AvailablePositive120091 - 12044113310.6
nucleoside triphosphate pyrophosphohydrolase family proteinD3Y57_RS01745Not AvailablePositive120441 - 12161344081.9
hypothetical proteinD3Y57_RS21245Not AvailableNegative121631 - 1218588639.54
uracil-dna glycosylase family proteinD3Y57_RS21250Not AvailablePositive121973 - 12231712940.7
hypothetical proteinD3Y57_RS01755Not AvailableNegative122284 - 12308129791.8
c1 family peptidaseD3Y57_RS01760Not AvailableNegative123053 - 12366121905.9
imma/irre family metallo-endopeptidaseD3Y57_RS01765Not AvailableNegative123742 - 12460832770.2
helix-turn-helix domain-containing proteinD3Y57_RS01770Not AvailableNegative124755 - 12512914017.6
hypothetical proteinD3Y57_RS01775Not AvailableNegative125126 - 12546411875.8

Displaying genes 381 – 390 of 1084 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.