Yersinia hibernica strain CFS1934

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia hibernica strain CFS1934 is a rod-shaped bacterium characterized by the presence of flagella, which may contribute to its motility. This strain is notable for its genetic structure, possessing two replicons, which could play a role in its adaptability and survival in various environments. The strain is cataloged under the accession numbers NZ_CP032487.1 and NZ_CP032488.1, indicating its genetic sequence availability for further study. The presence of flagella in Y. hibernica strain CFS1934 suggests that it may exhibit enhanced movement capabilities, potentially aiding in colonization and interaction with its environment. The dual replicon system might provide a genetic advantage, allowing for more complex regulation of gene expression and metabolic functions, which could be beneficial in diverse ecological niches. Understanding the traits of Yersinia hibernica strain CFS1934 contributes to a broader comprehension of the ecological roles that such bacteria may play. Their motility and genetic adaptability could influence their interactions within microbial communities, potentially affecting nutrient cycling or disease dynamics in their habitats. Thus, studying strains like CFS1934 can offer insights into the ecological functions of bacteria in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia hibernica
Strainstrain CFS1934

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia hibernica strain CFS1934
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete

Gene Summary

Adenine Count

15551 bp

Thymine Count

15600 bp

Guanine Count

14883 bp

Cytosine Count

14462 bp

Genome Length

60496 bp

Protein-coding Genes

57 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion system outer membrane ring subunit sctcD5F51_RS13195Not AvailableNegative2788882 - 279065764340.5
helix-turn-helix domain-containing proteinD5F51_RS13200Not AvailableNegative2790650 - 279151933031.7
prgh/eprh family type iii secretion apparatus proteinD5F51_RS13205Not AvailablePositive2791961 - 279322348138.7
type iii secretion system needle filament subunit sctfD5F51_RS13210Not AvailablePositive2793224 - 27934879605.26
type iii secretion system inner rod subunit sctiD5F51_RS13215Not AvailablePositive2793538 - 279386111962.8
type iii secretion system inner membrane ring lipoprotein sctjD5F51_RS13220Not AvailablePositive2793864 - 279463128049.7
type iii secretion proteinD5F51_RS13225Not AvailablePositive2794628 - 279518220743.7
type iii secretion proteinD5F51_RS13230Not AvailablePositive2795163 - 279584326174.2
type iii secretion system proteinD5F51_RS13235Not AvailablePositive2795836 - 279619213820.2
lytic transglycosylase domain-containing proteinD5F51_RS13240Not AvailablePositive2796238 - 279674118969.1

Displaying genes 2661 – 2670 of 4433 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.