Pseudomonas cavernae strain K2W31S-8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas cavernae strain K2W31S-8 is characterized by having a single replicon, which suggests a streamlined genomic organization. This trait can impact the strain's genetic stability and adaptability, traits that are often significant in microbial ecology and evolution. The accession number for this strain is NZ_CP032419.1, which serves as a reference for researchers looking to access its genomic data. The presence of only one replicon is notable, as many bacteria exhibit multiple replicons, which can facilitate a range of metabolic functions and adaptability to diverse environments. In the context of Pseudomonas species, this trait may influence its ecological niche, potentially allowing it to thrive in specific habitats where resources are limited or where competition is high. Understanding the genomic structure of Pseudomonas cavernae K2W31S-8 could provide insights into its ecological role and interactions within microbial communities. The single-replicon feature may indicate a specialization in certain metabolic pathways or environmental conditions, shedding light on the evolutionary pressures faced by this strain. Further exploration of its genomic traits could enhance our knowledge of the ecological dynamics where this strain is found, including its potential applications in biotechnology or bioremediation, given the genus Pseudomonas is known for its versatile metabolic capabilities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cavernae
Strainstrain K2W31S-8

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cavernae strain K2W31S-8
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas cavernae strain K2W31S-8


Gene Summary

Adenine Count

879277 bp

Thymine Count

876930 bp

Guanine Count

1593664 bp

Cytosine Count

1599744 bp

Genome Length

4949615 bp

Protein-coding Genes

4424 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Histone-like prokaryotic dna-binding protein familyD3880_RS10135Not AvailablePositive2188557 - 218885911465.8
merr family transcriptional regulatorD3880_RS10140Not AvailablePositive2188840 - 218919613975.9
Trna-pro;Not AvailableNot AvailablePositive2189286 - 2189362Not Available
Hypothetical proteinD3880_RS10150Not AvailableNegative2189746 - 219015014246.7
Tail proteinD3880_RS10155Not AvailableNegative2190159 - 219262186344.9
Hypothetical proteinD3880_RS10160Not AvailableNegative2192731 - 219305412330.8
hypothetical proteinD3880_RS10165Not AvailableNegative2193123 - 219368920532.0
Major head protein, gpt subunitD3880_RS10170Not AvailableNegative2193764 - 219467233116.3
Putative morD3880_RS10175Not AvailableNegative2194672 - 219519318817.0
hypothetical proteinD3880_RS22705Not AvailableNegative2195510 - 219669445911.1

Displaying genes 1 – 10 of 4517 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

17 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm00026073-methyl-(2E)-butenoyl-CoAC26H38N7O17P3SChemical structure of 3-methyl-(2E)-butenoyl-CoANot available
Average845.61Da
Monoisotopic845.1279693Da
BASm00026093-methyl-(2E)-glutaconyl-CoAC27H37N7O19P3SChemical structure of 3-methyl-(2E)-glutaconyl-CoANot available
Average888.61Da
Monoisotopic888.1105221Da

Displaying 1–10 of 17 metabolites

Health Effects

No health effects information available for this bacterium.