Hymenobacter oligotrophus strain sh-6

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter oligotrophus strain sh-6 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for containing a single replicon, which contributes to its genetic stability and replication processes. The genomic information for this strain is accessible under the accession number NZ_CP032318.1. Hymenobacter species, including strain sh-6, are typically found in oligotrophic environments, where nutrient levels are low. This ecological niche suggests that Hymenobacter oligotrophus is well-adapted to survive and thrive in conditions where other microorganisms may struggle. The ability of this strain to occupy such environments indicates potential ecological roles in nutrient cycling and microbial interactions within its habitat. Overall, the traits of Hymenobacter oligotrophus strain sh-6 reflect its specialized adaptations, emphasizing the significance of studying such organisms to understand microbial diversity and ecological dynamics in oligotrophic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter oligotrophus
Strainstrain sh-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter oligotrophus strain sh-6


Gene Summary

Adenine Count

8237 bp

Thymine Count

7936 bp

Guanine Count

12998 bp

Cytosine Count

12998 bp

Genome Length

42169 bp

Protein-coding Genes

34 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tlpa family protein disulfide reductaseD3Y59_RS17735Not AvailablePositive11349 - 1195121589.3
vit family proteinD3Y59_RS17740Not AvailableNegative12185 - 1287723482.2
zip family metal transporterD3Y59_RS17745Not AvailableNegative13018 - 1379426461.9
heavy metal translocating p-type atpaseD3Y59_RS17750Not AvailableNegative13861 - 1598677427.0
hypothetical proteinD3Y59_RS17755Not AvailableNegative16035 - 1664921386.9
efflux rnd transporter periplasmic adaptor subunitD3Y59_RS17760Not AvailableNegative16679 - 1786642374.5
cusa/czca family heavy metal efflux rnd transporterD3Y59_RS17765Not AvailableNegative17891 - 22300160104.0
duf6660 family proteinD3Y59_RS17770Not AvailableNegative22486 - 2281511366.6
transporterD3Y59_RS17775Not AvailableNegative22911 - 2363026456.1
hypothetical proteinD3Y59_RS17780Not AvailablePositive24110 - 243348500.07

Displaying genes 11 – 20 of 34 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.