Vibrio neocaledonicus strain CGJ02-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio neocaledonicus strain CGJ02-2 is characterized by its possession of two replicons, which are essential for its genomic stability and function. The genomic information for this strain is cataloged under two specific accessions: NZ_CP032213.1 and NZ_CP032214.1. These accessions provide a basis for further genomic studies and comparative analysis with other Vibrio species. The presence of two replicons can indicate a complex genomic architecture, which may contribute to the strain's adaptability in various environments. This adaptability is significant for Vibrio species, as they are often found in marine ecosystems and can thrive under varying conditions. The genomic data associated with CGJ02-2 can help elucidate its ecological role, particularly in relation to its interactions within marine microbiomes. Understanding the genomic structure of Vibrio neocaledonicus strain CGJ02-2 not only adds to our knowledge of Vibrio diversity but also sheds light on the evolutionary mechanisms that allow this bacterium to survive in aquatic habitats. This information may provide insights into its potential applications in biotechnology or environmental monitoring, highlighting the importance of characterizing microbial strains within their ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio neocaledonicus
Strainstrain CGJ02-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio neocaledonicus strain CGJ02-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio neocaledonicus strain CGJ02-2 chromosome 1, complete

Gene Summary

Adenine Count

933642 bp

Thymine Count

944450 bp

Guanine Count

758892 bp

Cytosine Count

763299 bp

Genome Length

3400283 bp

Protein-coding Genes

3047 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyea family type iii secretion system gatekeeper subunitD3H41_RS08755Not AvailableNegative1851066 - 185135010981.9
type iii secretion system gatekeeper subunit sctwD3H41_RS08760Not AvailableNegative1851331 - 185222433439.4
sctn family type iii secretion system atpase vscnD3H41_RS08765Not AvailablePositive1852410 - 185373247883.8
type iii secretion proteinD3H41_RS08770Not AvailablePositive1853729 - 185419018401.9
type iii secretion system needle length determinantD3H41_RS08775Not AvailablePositive1854200 - 185541144741.1
sctq family type iii secretion system cytoplasmic ring protein vscqD3H41_RS08780Not AvailablePositive1855408 - 185637635592.6
sctr family type iii secretion system export apparatus subunit vscrD3H41_RS08785Not AvailablePositive1856373 - 185702324175.4
scts family type iii secretion system export apparatus subunit vscsD3H41_RS08790Not AvailablePositive1857037 - 18573039595.14
type iii secretion system export apparatus subunit scttD3H41_RS08795Not AvailablePositive1857300 - 185808529097.4
sctu family type iii secretion system export apparatus subunit vscuD3H41_RS08800Not AvailablePositive1858101 - 185915038557.7

Displaying genes 1731 – 1740 of 4878 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.