Klebsiella pneumoniae strain XJ-K1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Klebsiella

Description

Klebsiella pneumoniae strain XJ-K1 is a gram-negative, rod-shaped bacterium that exhibits a versatile lifestyle as a facultative anaerobe. It is a chemoheterotroph, deriving energy from organic compounds, and typically grows optimally at 37°C, within a mesophilic temperature range. This strain is notable for its motility, facilitated by the presence of flagella, and can be found in various cell arrangements, including chains, pairs, and singles. K. pneumoniae XJ-K1 is primarily host-associated, with a broad spectrum of potential hosts, including Homo sapiens, various species of birds (Gallus gallus, Phasianidae), mammals (Canis lupus familiaris, Sus scrofa, Equidae), amphibians, and even plant life (Viridiplantae). This extensive host range underscores its ecological adaptability and potential for cross-species transmission. Clinically, K. pneumoniae XJ-K1 is of significant concern due to its pathogenicity in humans, where it is associated with a variety of severe health effects such as bacteremia, urinary tract infections, pneumonia, and more. It is linked to conditions ranging from localized infections like cystitis to systemic issues such as sepsis and neonatal sepsis. The strain's ability to cause infections in diverse anatomical sites, including the liver and lungs, highlights its virulence and adaptability in human hosts. The presence of multiple replicons and membranes suggests a complex genetic and structural organization, which may contribute to its pathogenic capabilities. Understanding the ecological and biological behavior of K. pneumoniae XJ-K1 is crucial for developing effective strategies to manage its associated health risks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae
Strainstrain XJ-K1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Klebsiella pneumoniae strain XJ-K1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityHuman

Genome Summary

Klebsiella pneumoniae strain XJ-K1


Gene Summary

Adenine Count

51595 bp

Thymine Count

51337 bp

Guanine Count

51865 bp

Cytosine Count

52612 bp

Genome Length

207409 bp

Protein-coding Genes

224 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
site-specific integraseD3H40_RS27275Not AvailableNegative8638 - 941728711.2
hypothetical proteinD3H40_RS27280Not AvailableNegative9414 - 1023532280.2
is21 family transposaseD3H40_RS31335Not AvailableNegative10735 - 109988990.82
hypothetical proteinD3H40_RS27290Not AvailablePositive11207 - 114138452.49
hypothetical proteinD3H40_RS27295Not AvailableNegative11403 - 1169611043.4
duf3800 domain-containing proteinD3H40_RS27300Not AvailableNegative11712 - 1284543099.3
type ii toxin-antitoxin system vapb family antitoxinD3H40_RS27305Not AvailablePositive13453 - 136838678.21
type ii toxin-antitoxin system vapc family toxinD3H40_RS27310Not AvailablePositive13680 - 1412316007.7
is21 family transposaseD3H40_RS31340Not AvailableNegative14137 - 1455315580.6
is21 family transposaseD3H40_RS27320Not AvailableNegative14543 - 1485011952.3

Displaying genes 11 – 20 of 5820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1246 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1246 metabolites

Health Effects

Health ConditionRelationReference
Mink pneumoniaCausesPMC11316373
EnteritisCausesPMC11316373
Urinary tract infectionCausesPMC11316373
CystitisCausesPMC11316373
PneumoniaCausesPMC11316373
MeningitisCausesPMC11316373
Liver abscessCausesPMC11316373
Endogenous endophthalmitisCausesPMC11316373
SepsisCausesPMC11316373
PneumoniaCausesPMC12198309

Displaying health effects 1 – 10 of 53 in total