Rickettsia japonica strain LA4/2015

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rickettsiales

Family

Rickettsiaceae

Genus

Rickettsia

Description

Rickettsia japonica strain LA4/2015 is characterized by the presence of flagella, which are essential for motility in various bacterial species. This trait may facilitate its interactions within its ecological niche, potentially influencing its pathogenicity or the dynamics of its infection cycle. The strain has a single replicon, indicating a streamlined genomic structure that is typical for many Rickettsia species, which often exhibit reduced genomes due to their intracellular lifestyle. The accession number for Rickettsia japonica strain LA4/2015 in genetic databases is NZ_CP032049.1, which provides a reference for researchers seeking genetic and genomic information about this strain. This accession allows for the retrieval of sequence data, which can be critical for studies on evolutionary relationships, genetic variations, and the mechanisms of pathogenicity among Rickettsia species. Understanding the traits of Rickettsia japonica strain LA4/2015, including its flagellum presence and genomic structure, can enhance our knowledge of its ecological role and pathogenic potential. The motility conferred by flagella may play a significant role in the bacterium's ability to navigate its environment, possibly impacting its transmission dynamics and interactions with hosts. Overall, the combination of these traits underscores the complex ecological interactions that Rickettsia japonica may engage in within its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRickettsiales
FamilyRickettsiaceae
GenusRickettsia
SpeciesRickettsia japonica
Strainstrain LA4/2015

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Ixodida, Haemaphysalis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rickettsia japonica strain LA4/2015 chromosome, complete genome.

Gene Summary

Adenine Count

435277 bp

Thymine Count

432827 bp

Guanine Count

209781 bp

Cytosine Count

205369 bp

Genome Length

1283254 bp

Protein-coding Genes

1439 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein assembly factor bamaD0Z68_RS01250Not AvailableNegative216448 - 21875486971.6
rip metalloprotease rsepD0Z68_RS01255Not AvailableNegative218994 - 22006739255.9
transcription antitermination factor nusbD0Z68_RS01260Not AvailablePositive220348 - 22081817779.5
rlme family rna methyltransferaseD0Z68_RS01265Not AvailablePositive220954 - 22163725757.1
hypothetical proteinD0Z68_RS01270Not AvailableNegative221700 - 22276139538.1
hypothetical proteinD0Z68_RS01275Not AvailablePositive222935 - 22387934918.1
type ii toxin-antitoxin system rata family toxinD0Z68_RS01280Not AvailableNegative223938 - 22437817074.8
duf1674 domain-containing proteinD0Z68_RS01285Not AvailableNegative224378 - 22465910533.2
16s rrna (uracil(1498)-n(3))-methyltransferaseD0Z68_RS01290Not AvailablePositive224672 - 22540327337.3
duf378 domain-containing proteinD0Z68_RS01300Not AvailableNegative225492 - 2257288607.03

Displaying genes 231 – 240 of 1479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Japanese spotted feverCausesPMC6200003
Japanese spotted feverCausesPMC6711240

Displaying health effects 1 – 2 of 2 in total