Rickettsia japonica strain LA4/2015

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rickettsiales

Family

Rickettsiaceae

Genus

Rickettsia

Description

Rickettsia japonica strain LA4/2015 is characterized by the presence of flagella, which are essential for motility in various bacterial species. This trait may facilitate its interactions within its ecological niche, potentially influencing its pathogenicity or the dynamics of its infection cycle. The strain has a single replicon, indicating a streamlined genomic structure that is typical for many Rickettsia species, which often exhibit reduced genomes due to their intracellular lifestyle. The accession number for Rickettsia japonica strain LA4/2015 in genetic databases is NZ_CP032049.1, which provides a reference for researchers seeking genetic and genomic information about this strain. This accession allows for the retrieval of sequence data, which can be critical for studies on evolutionary relationships, genetic variations, and the mechanisms of pathogenicity among Rickettsia species. Understanding the traits of Rickettsia japonica strain LA4/2015, including its flagellum presence and genomic structure, can enhance our knowledge of its ecological role and pathogenic potential. The motility conferred by flagella may play a significant role in the bacterium's ability to navigate its environment, possibly impacting its transmission dynamics and interactions with hosts. Overall, the combination of these traits underscores the complex ecological interactions that Rickettsia japonica may engage in within its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRickettsiales
FamilyRickettsiaceae
GenusRickettsia
SpeciesRickettsia japonica
Strainstrain LA4/2015

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Ixodida, Haemaphysalis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rickettsia japonica strain LA4/2015 chromosome, complete genome.

Gene Summary

Adenine Count

435277 bp

Thymine Count

432827 bp

Guanine Count

209781 bp

Cytosine Count

205369 bp

Genome Length

1283254 bp

Protein-coding Genes

1439 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetratricopeptide repeat proteinD0Z68_RS07600Not AvailableNegative1258644 - 125892010089.2
amino acid abc transporter atp-binding proteinD0Z68_RS07605Not AvailableNegative1259139 - 125986127097.6
mbl fold metallo-hydrolaseD0Z68_RS07610Not AvailableNegative1259865 - 126062929517.5
phosphatase pap2 family proteinD0Z68_RS07615Not AvailablePositive1260644 - 126129125242.7
type ii toxin-antitoxin system relb/dinj family antitoxinD0Z68_RS07620Not AvailablePositive1261385 - 12616489502.57
tetratricopeptide repeat proteinD0Z68_RS09945Not AvailablePositive1261635 - 12618889309.69
lptf/lptg family permeaseD0Z68_RS07630Not AvailablePositive1262024 - 126310641234.5
dna polymerase iii subunit chiD0Z68_RS07635Not AvailableNegative1263112 - 126357617833.7
Trna-leuNot AvailableNot AvailablePositive1263613 - 1263697Not Available
succinyl-diaminopimelate desuccinylaseD0Z68_RS07645Not AvailableNegative1263776 - 126492142863.0

Displaying genes 1441 – 1450 of 1479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Japanese spotted feverCausesPMC6200003
Japanese spotted feverCausesPMC6711240

Displaying health effects 1 – 2 of 2 in total