Rickettsia japonica strain LA4/2015

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rickettsiales

Family

Rickettsiaceae

Genus

Rickettsia

Description

Rickettsia japonica strain LA4/2015 is characterized by the presence of flagella, which are essential for motility in various bacterial species. This trait may facilitate its interactions within its ecological niche, potentially influencing its pathogenicity or the dynamics of its infection cycle. The strain has a single replicon, indicating a streamlined genomic structure that is typical for many Rickettsia species, which often exhibit reduced genomes due to their intracellular lifestyle. The accession number for Rickettsia japonica strain LA4/2015 in genetic databases is NZ_CP032049.1, which provides a reference for researchers seeking genetic and genomic information about this strain. This accession allows for the retrieval of sequence data, which can be critical for studies on evolutionary relationships, genetic variations, and the mechanisms of pathogenicity among Rickettsia species. Understanding the traits of Rickettsia japonica strain LA4/2015, including its flagellum presence and genomic structure, can enhance our knowledge of its ecological role and pathogenic potential. The motility conferred by flagella may play a significant role in the bacterium's ability to navigate its environment, possibly impacting its transmission dynamics and interactions with hosts. Overall, the combination of these traits underscores the complex ecological interactions that Rickettsia japonica may engage in within its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRickettsiales
FamilyRickettsiaceae
GenusRickettsia
SpeciesRickettsia japonica
Strainstrain LA4/2015

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Ixodida, Haemaphysalis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rickettsia japonica strain LA4/2015 chromosome, complete genome.

Gene Summary

Adenine Count

435277 bp

Thymine Count

432827 bp

Guanine Count

209781 bp

Cytosine Count

205369 bp

Genome Length

1283254 bp

Protein-coding Genes

1439 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinD0Z68_RS09255Not AvailableNegative1075370 - 107576815215.0
hypothetical proteinD0Z68_RS08180Not AvailableNegative1075786 - 107619916336.8
entericidin a/b family lipoproteinD0Z68_RS06605Not AvailablePositive1076394 - 10765705944.24
rpn family recombination-promoting nuclease/putative transposaseD0Z68_RS06610Not AvailableNegative1076642 - 107735227669.1
pd-(d/e)xk nuclease family transposaseD0Z68_RS06615Not AvailableNegative1077384 - 10775305385.7
16s rrna (cytidine(1402)-2'-o)-methyltransferaseD0Z68_RS06620Not AvailableNegative1077605 - 107845031928.0
penicillin-binding protein activatorD0Z68_RS06625Not AvailablePositive1078476 - 107959441959.5
twin-arginine translocase tataD0Z68_RS06630Not AvailableNegative1079826 - 10799875756.21
phosphatidylglycerophosphatase aD0Z68_RS06635Not AvailablePositive1080065 - 108066422859.7
50s ribosomal protein l21D0Z68_RS06640Not AvailablePositive1080753 - 108107012031.0

Displaying genes 1251 – 1260 of 1479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Japanese spotted feverCausesPMC6200003
Japanese spotted feverCausesPMC6711240

Displaying health effects 1 – 2 of 2 in total