Pseudoalteromonas piscicida strain DE1-A

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas piscicida strain DE1-A is a marine, Gram-negative bacterium characterized by its rod shape and mobility. This strain has been isolated from various aquatic environments, including Delaware Bay, Hainan Island, and mariculture water, indicating its adaptability to different marine habitats. The genetic makeup of P. piscicida strain DE1-A is noteworthy, as it contains two replicons, which may suggest a complex genetic regulatory system. The strain is represented in the genomic databases with accession numbers NZ_CP031760.1 and NZ_CP031759.1, highlighting its availability for further research and potential applications. In terms of ecological significance, Pseudoalteromonas species are known for their role in marine ecosystems, often playing a part in nutrient cycling and interactions with other marine organisms. The presence of P. piscicida in mariculture environments may indicate its potential involvement in the health and sustainability of aquaculture systems, as well as its interactions with both cultivated species and wild marine life. Understanding the traits and behaviors of this strain can provide insights into its ecological role and potential applications in biotechnological fields, such as bioremediation or the development of antimicrobial agents.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas piscicida
Strainstrain DE1-A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatDelaware Bay; Hainan Island; mariculture water; Marine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas piscicida strain DE1-A chromosome 1, complete

Gene Summary

Adenine Count

1174966 bp

Thymine Count

1179793 bp

Guanine Count

903423 bp

Cytosine Count

907796 bp

Genome Length

4165978 bp

Protein-coding Genes

3589 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome d ubiquinol oxidase subunit iiD0N37_RS19690Not AvailableNegative175718 - 17671637180.5
cytochrome ubiquinol oxidase subunit iD0N37_RS19695Not AvailableNegative176709 - 17805550486.4
gbsr/marr family transcriptional regulatorD0N37_RS19700Not AvailableNegative178071 - 17861620684.0
ectonucleotide pyrophosphatase/phosphodiesteraseD0N37_RS19705Not AvailablePositive178866 - 18005044653.8
sensor domain-containing diguanylate cyclaseD0N37_RS19715Not AvailablePositive180526 - 18211559039.0
yfcc family proteinD0N37_RS19720Not AvailablePositive182210 - 18361350218.0
putative bifunctional diguanylate cyclase/phosphodiesteraseD0N37_RS19725Not AvailablePositive183789 - 18633596140.2
ferrochelataseD0N37_RS19730Not AvailableNegative186392 - 18741138724.4
methyl-accepting chemotaxis proteinD0N37_RS19735Not AvailablePositive187648 - 18920157410.5
s41 family peptidaseD0N37_RS19740Not AvailableNegative189304 - 18972615576.2

Displaying genes 3961 – 3970 of 4868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.