Pseudoalteromonas piscicida strain DE1-A

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas piscicida strain DE1-A is a marine, Gram-negative bacterium characterized by its rod shape and mobility. This strain has been isolated from various aquatic environments, including Delaware Bay, Hainan Island, and mariculture water, indicating its adaptability to different marine habitats. The genetic makeup of P. piscicida strain DE1-A is noteworthy, as it contains two replicons, which may suggest a complex genetic regulatory system. The strain is represented in the genomic databases with accession numbers NZ_CP031760.1 and NZ_CP031759.1, highlighting its availability for further research and potential applications. In terms of ecological significance, Pseudoalteromonas species are known for their role in marine ecosystems, often playing a part in nutrient cycling and interactions with other marine organisms. The presence of P. piscicida in mariculture environments may indicate its potential involvement in the health and sustainability of aquaculture systems, as well as its interactions with both cultivated species and wild marine life. Understanding the traits and behaviors of this strain can provide insights into its ecological role and potential applications in biotechnological fields, such as bioremediation or the development of antimicrobial agents.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas piscicida
Strainstrain DE1-A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatDelaware Bay; Hainan Island; mariculture water; Marine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas piscicida strain DE1-A chromosome 1, complete

Gene Summary

Adenine Count

1174966 bp

Thymine Count

1179793 bp

Guanine Count

903423 bp

Cytosine Count

907796 bp

Genome Length

4165978 bp

Protein-coding Genes

3589 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide chain release factor 3D0N37_RS14960Not AvailableNegative3202250 - 320383959731.4
sensor domain-containing diguanylate cyclaseD0N37_RS14965Not AvailableNegative3204124 - 320510136572.7
duf3581 family proteinD0N37_RS14970Not AvailableNegative3205208 - 320590626012.2
cytochrome b/b6 domain-containing proteinD0N37_RS14975Not AvailableNegative3206084 - 320672223106.0
transporter substrate-binding domain-containing proteinD0N37_RS14980Not AvailablePositive3206896 - 320775332322.4
integrase core domain-containing proteinD0N37_RS14985Not AvailablePositive3207829 - 320831617956.6
marr family winged helix-turn-helix transcriptional regulatorD0N37_RS14990Not AvailablePositive3208303 - 320874016438.2
glutamate--trna ligaseD0N37_RS14995Not AvailableNegative3208806 - 321029356695.0
glutaredoxin family proteinD0N37_RS15000Not AvailableNegative3210376 - 321074114274.5
ggdef domain-containing proteinD0N37_RS15005Not AvailableNegative3210828 - 321179636588.4

Displaying genes 3001 – 3010 of 4868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.