Pseudoalteromonas piscicida strain DE1-A

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas piscicida strain DE1-A is a marine, Gram-negative bacterium characterized by its rod shape and mobility. This strain has been isolated from various aquatic environments, including Delaware Bay, Hainan Island, and mariculture water, indicating its adaptability to different marine habitats. The genetic makeup of P. piscicida strain DE1-A is noteworthy, as it contains two replicons, which may suggest a complex genetic regulatory system. The strain is represented in the genomic databases with accession numbers NZ_CP031760.1 and NZ_CP031759.1, highlighting its availability for further research and potential applications. In terms of ecological significance, Pseudoalteromonas species are known for their role in marine ecosystems, often playing a part in nutrient cycling and interactions with other marine organisms. The presence of P. piscicida in mariculture environments may indicate its potential involvement in the health and sustainability of aquaculture systems, as well as its interactions with both cultivated species and wild marine life. Understanding the traits and behaviors of this strain can provide insights into its ecological role and potential applications in biotechnological fields, such as bioremediation or the development of antimicrobial agents.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas piscicida
Strainstrain DE1-A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatDelaware Bay; Hainan Island; mariculture water; Marine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas piscicida strain DE1-A chromosome 1, complete

Gene Summary

Adenine Count

1174966 bp

Thymine Count

1179793 bp

Guanine Count

903423 bp

Cytosine Count

907796 bp

Genome Length

4165978 bp

Protein-coding Genes

3589 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinD0N37_RS14305Not AvailableNegative3066416 - 306671811683.7
is3 family transposaseD0N37_RS14310Not AvailablePositive3066818 - 306799845298.0
p-loop ntpase fold proteinD0N37_RS14315Not AvailableNegative3067991 - 306916044315.7
duf6957 family proteinD0N37_RS14320Not AvailableNegative3069283 - 306958511412.8
tnsd family tn7-like transposition proteinD0N37_RS14325Not AvailableNegative3069590 - 307102655113.6
tniq family proteinD0N37_RS14330Not AvailableNegative3071033 - 307198337010.3
aaa family atpaseD0N37_RS14335Not AvailableNegative3071980 - 307345555361.7
hypothetical proteinD0N37_RS14340Not AvailableNegative3073506 - 307575287249.5
tnsa endonuclease n-terminal domain-containing proteinD0N37_RS14345Not AvailableNegative3075755 - 307657632224.8
transcription factorD0N37_RS14350Not AvailablePositive3077034 - 30772738964.79

Displaying genes 2871 – 2880 of 4868 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.