Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Pseudoalteromonadaceae
Genus
Pseudoalteromonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Pseudoalteromonadaceae |
| Genus | Pseudoalteromonas |
| Species | Pseudoalteromonas piscicida |
| Strain | strain DE1-A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Delaware Bay; Hainan Island; mariculture water; Marine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudoalteromonas piscicida strain DE1-A chromosome 1, complete
Gene Summary
Adenine Count
1174966 bp
Thymine Count
1179793 bp
Guanine Count
903423 bp
Cytosine Count
907796 bp
Genome Length
4165978 bp
Protein-coding Genes
3589 genes
Non-Coding Genes
211 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system domain-containing protein | D0N37_RS24700 | Not Available | Positive | 1953979 - 1954749 | 29198.0 |
| type vi secretion system contractile sheath small subunit | D0N37_RS09180 | Not Available | Positive | 1954808 - 1955326 | 19526.2 |
| type vi secretion system contractile sheath large subunit | D0N37_RS09185 | Not Available | Positive | 1955338 - 1956864 | 57692.7 |
| hypothetical protein | D0N37_RS09195 | Not Available | Positive | 1957617 - 1958123 | 19446.4 |
| hcp family type vi secretion system effector | D0N37_RS09200 | Not Available | Positive | 1958289 - 1958774 | 18828.1 |
| type vi secretion system baseplate subunit tsse | D0N37_RS09205 | Not Available | Positive | 1958853 - 1959254 | 14897.8 |
| type vi secretion system baseplate subunit tssf | D0N37_RS09210 | Not Available | Positive | 1959254 - 1960978 | 64365.4 |
| type vi secretion system baseplate subunit tssg | D0N37_RS09215 | Not Available | Positive | 1960979 - 1961944 | 35793.1 |
| type vi secretion system atpase tssh | D0N37_RS09220 | Not Available | Positive | 1961973 - 1964660 | 98270.2 |
| type vi secretion system vgr family protein | D0N37_RS09225 | Not Available | Positive | 1964687 - 1966726 | 74152.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
